Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021354
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0382 - 20142830-20144329                                         30   1.5  
01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093           30   1.5  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    29   3.4  
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310...    29   3.4  
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184...    29   4.5  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    28   5.9  
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225...    28   7.8  

>06_03_0382 - 20142830-20144329
          Length = 499

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 601 SSSVRTPAPAATVPSAMHTSQTAP 672
           SSS  +P P A  P  MHTS +AP
Sbjct: 306 SSSSESPTPVAGTPRGMHTSVSAP 329


>01_01_0648 - 4917123-4917651,4917728-4917857,4917958-4918093
          Length = 264

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 638 TVAAGAGVRTDDDIIRLCGIVFCNADGERGACGPLLPLKFPPDVA 504
           T+AA    RTD+D+                AC PLLPL  PP +A
Sbjct: 92  TIAAQLERRTDNDVKNHWNTKLKRRLAAAAACTPLLPLPAPPPLA 136


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 587 CGIVFCNADGERGACGPLLPLKFPPDVADEVLVRA*DEQGP 465
           C  +  N  GE     P LP   PP+  D  L+RA    GP
Sbjct: 106 CDHLLPNLRGEHRPPSPFLPAAAPPETRDLGLIRAEAASGP 146


>01_01_0412 -
           3099509-3099634,3099758-3099904,3099991-3100089,
           3100171-3100602,3101121-3101599,3101683-3101728
          Length = 442

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 544 HAPLSPSALQNTIPHNLIMSSSVRTPAPAATVPSAMHTSQTAP 672
           H P   S+    IPH +I+ S    PA +AT  + M  SQ  P
Sbjct: 238 HLPSVASSSSTAIPHEVIIPS--YQPATSATTSTPMRASQPLP 278


>07_03_0607 +
           19916946-19917479,19917543-19918010,19918092-19918479,
           19919025-19919076,19919294-19919333
          Length = 493

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 479 LKRVQAPHQLRLEGT*AAVMARTRLSPRP 565
           + R   PH LR   + AA + R RL PRP
Sbjct: 36  MARELVPHDLRAAVSWAATLVRARLGPRP 64


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +1

Query: 541  PHAPLSPSALQNTIPHNLIMSSSVRTPAPAATVPSAMHTSQTAP 672
            P+ PL+        PH L   S     +PA   P     SQT+P
Sbjct: 1655 PNGPLASPGGTEASPHGLPSPSDSIVESPATASPQVSEISQTSP 1698


>12_01_0298 -
           2250517-2251235,2251331-2251577,2251615-2252951,
           2256029-2256188
          Length = 820

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 541 PHAPLSPSALQNTIPHN-LIMSSSVRTPAPAATVPSA 648
           P +P  PS+ Q+ +P N    SSSV + +PA   P +
Sbjct: 318 PTSPSVPSSPQSVVPSNPAASSSSVASSSPALATPES 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,485,422
Number of Sequences: 37544
Number of extensions: 392245
Number of successful extensions: 1106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)