Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021354
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5901| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_28821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.9  

>SB_5901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 578 VFCNADGERGACGP--LLPLKFPPDVADEVLVRA*DEQGPW 462
           +F N+DG  G C P  LLPL+  P V    L      + P+
Sbjct: 8   IFPNSDGREGVCSPYLLLPLEIIPAVKQRALPERHKARAPY 48


>SB_28821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 633 GGRSGC-PD*R*HYKIVRYSILQCGRGERRVRAITAAQVPSRRS 505
           GGRS   P  + H K V++ IL     ++R  + T  Q+PS RS
Sbjct: 13  GGRSPPRPTVKFHQKTVKFHILSVEFHQKRSNSTTFGQIPSSRS 56


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -2

Query: 360 HVRIHDGPPTTPAHPSSLNESKYDLVLANRHPLHENKR*LKLHPVLSAYHKYNYFPQTTI 181
           H+RI+   P   +H +S +   Y +++++R+  H     L+++P++ +Y    +     I
Sbjct: 753 HLRIY---PIIISHRNSCHLRIYPIIISHRNSCH-----LRIYPIIISYGNSGHLRIYPI 804

Query: 180 IYSTTQSC 157
           I S   SC
Sbjct: 805 IISHRNSC 812



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -2

Query: 360 HVRIHDGPPTTPAHPSSLNESKYDLVLANRHPLHENKR*LKLHPVLSAYHKYNYFPQTTI 181
           H+RI+   P   +H +S +   Y +++++R+  H     L+++P++ +Y    +     I
Sbjct: 813 HLRIY---PIIISHRNSCHLRIYPIIISHRNSCH-----LRIYPIIISYGNSGHLRIYPI 864

Query: 180 IYSTTQSC 157
           I S   SC
Sbjct: 865 IISHRNSC 872


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,866,342
Number of Sequences: 59808
Number of extensions: 433241
Number of successful extensions: 1079
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)