Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021354
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.28 
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              25   0.50 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 458 QERQKPNTSHKGPRPAPH 405
           Q+ Q+P++   GP+P+PH
Sbjct: 11  QQSQQPSSGAPGPQPSPH 28


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 309 LNESKYDLVLANRHPLHENKR*LKLHPVLSAYHKYNYFPQ 190
           LN+++ D +LA   P+ +    +K+  +L  + KY    Q
Sbjct: 92  LNDNEADQLLAECSPISDPNALIKISKILECFFKYKTINQ 131


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 385 LAQHGVQCGAGRGPLWL 435
           LA+H V C   RG LW+
Sbjct: 373 LARHAVACFLTRGDLWI 389


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 427 LWLVFGFCRSCTH 465
           ++LV  FCR+C H
Sbjct: 28  MYLVRAFCRNCIH 40



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 202 LFSTNYNNIFHNTILFTYLKLRTVSQRRG 116
           LFS ++   F + I   + K RT + RRG
Sbjct: 64  LFSKDFRFAFKSIICKCFCKRRTNTLRRG 92


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 427 LWLVFGFCRSCTH 465
           ++LV  FCR+C H
Sbjct: 476 MYLVRAFCRNCIH 488



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 202 LFSTNYNNIFHNTILFTYLKLRTVSQRRG 116
           LFS ++   F + I   + K RT + RRG
Sbjct: 512 LFSKDFRFAFKSIICKCFCKRRTNTLRRG 540


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 219 PIILGEASV--NVYFHVKDADLPIQGRIWIRS 308
           P +L E S    +++H KD D+  +  +W ++
Sbjct: 102 PQLLREMSALFKLFYHAKDFDIFFKTALWAKN 133


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 219 PIILGEASV--NVYFHVKDADLPIQGRIWIRS 308
           P +L E S    +++H KD D+  +  +W ++
Sbjct: 102 PQLLREMSALFKLFYHAKDFDIFFKTALWAKN 133


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 346 MNSDVHRHQAHPPLAQH 396
           +NSDV      PP+ QH
Sbjct: 267 LNSDVQPGHGSPPVKQH 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,159
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)