Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021353
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 42 5e-04
11_06_0281 + 21881382-21881538,21882162-21882394,21882783-218828... 35 0.071
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 33 0.16
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 31 0.88
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 30 2.0
10_08_0931 - 21647562-21649037 29 3.5
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 29 4.7
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 28 8.2
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 281 DRCKKIITLSGAGISTSAGIPDFRSPETGLY 373
D+ KK++ L+GAG+ST +GIPD+RSP G Y
Sbjct: 40 DQSKKLMVLTGAGMSTESGIPDYRSP-NGAY 69
>11_06_0281 +
21881382-21881538,21882162-21882394,21882783-21882869,
21882920-21883396
Length = 317
Score = 34.7 bits (76), Expect = 0.071
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = -3
Query: 234 LFRVVLPVQDPEG*RVRVLRPSTFERHPRRDRETYF*GFPS 112
LF + LP+QDP+ R R RP + HPRR R GFP+
Sbjct: 166 LFLLRLPLQDPDRRRAR-RRPHPLDAHPRRRRGHRTAGFPA 205
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 523 LHEKGLLLRHYTQNIDTLERGAGIPEEKLVEAHG 624
L + G L +QN+D+L +G+P EKL E HG
Sbjct: 71 LEKTGRLKFVISQNVDSLHLRSGLPREKLAELHG 104
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 QER*VQEDHNTFRSWYFYLC-WNSRLP*SRNRIIS*LTEVRTTSTTGDIRN 423
QE Q+D N F W FYLC W P S+ +II L ++T D N
Sbjct: 649 QEGGPQDDGNLFTRW-FYLCMWYKDDPHSQEKIIYYLARLKTKDILRDSGN 698
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 299 ITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTLAKELF 478
+ GA I + D R P+ ++ N ++Y+LP+P I + N P+ KE+F
Sbjct: 265 MAFQGADIDIRV-VRDGRGPDCNIWSNFEQYKLPEPLCILRAD---NNVPPWRPGLKEVF 320
>10_08_0931 - 21647562-21649037
Length = 491
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 24 RKMSANSPPGKSGGHETVDESP 89
R++S ++P G GGHETV SP
Sbjct: 196 RRISQDTPGGGGGGHETVLPSP 217
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 60 GGHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLFSPQDLEPAEPPEKV 236
GGHET +++ +++ T + ++ + + L + V L +G+ SP + + EKV
Sbjct: 747 GGHETAEKNGRSLKNTIEVATVLRIVQRLFKEAVSTQSKLSVGVVSPYNAQVRAIQEKV 805
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 359 ETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTL----AKELFPGSFKPTI 502
E + HN+++Y+LP + + ++ N + F+ L +EL P + PT+
Sbjct: 94 ERKIMHNIRQYQLPLQKYMAMMDLQEGNERLFYKLLIDNVEELLPVVYTPTV 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,333,667
Number of Sequences: 37544
Number of extensions: 442847
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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