Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021353
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical pr...    89   2e-18
Z50177-4|CAA90546.1|  287|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical pr...    42   4e-04
U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir relat...    41   7e-04
Z50177-5|CAE46663.1|  289|Caenorhabditis elegans Hypothetical pr...    38   0.005
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>Z70310-7|CAA94364.1|  607|Caenorhabditis elegans Hypothetical
           protein R11A8.4 protein.
          Length = 607

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 39/75 (52%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
 Frame = +2

Query: 290 KKIITLSGAGISTSAGIPDFRSPETGLYHNLQKY--ELPQPQAIFEINFFRQNPKPFFTL 463
           K I+ L+GAG+S S GIPDFRS + G+Y  L+    +LP P A+F+I +FR+NP PF+  
Sbjct: 146 KHILVLTGAGVSVSCGIPDFRSKD-GIYARLRSEFPDLPDPTAMFDIRYFRENPAPFYNF 204

Query: 464 AKELFPGSFKPTISH 508
           A+E+FPG F P++SH
Sbjct: 205 AREIFPGQFVPSVSH 219



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = +1

Query: 511 FIRLLHEKGLLLRHYTQNIDTLERGAGIPEEKLVEAHG 624
           FI+ L   G LLR+YTQNIDTLE   GI  +++VE HG
Sbjct: 221 FIKELETSGRLLRNYTQNIDTLEHQTGI--KRVVECHG 256


>Z50177-4|CAA90546.1|  287|Caenorhabditis elegans Hypothetical
           protein F46G10.7a protein.
          Length = 287

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = +2

Query: 293 KIITLSGAGISTSAGIPDFRSPETGLY 373
           K++ +SGAGIST +GIPD+RS + GLY
Sbjct: 29  KLLVISGAGISTESGIPDYRSKDVGLY 55


>Z50177-6|CAA90547.1|  287|Caenorhabditis elegans Hypothetical
           protein F46G10.3 protein.
          Length = 287

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 293 KIITLSGAGISTSAGIPDFRSPETGLY 373
           K++ ++GAGIST +GIPD+RS + GLY
Sbjct: 29  KLLIITGAGISTESGIPDYRSKDVGLY 55


>U97193-7|AAK68163.1|  299|Caenorhabditis elegans Yeast sir related
           protein 2.4 protein.
          Length = 299

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +1

Query: 514 IRLLHEKGLLLRHYTQNIDTLERGAGIPEEKLVEAHGILHI 636
           I  LH+ G +    TQN+D L+R  GIP E L+E HG L +
Sbjct: 108 ILALHKAGYIKTIITQNVDGLDRKVGIPVEDLIEVHGNLFL 148



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 290 KKIITLSGAGISTSAGIPDFRSPE 361
           K I  L GAG+ST + +PDFR  +
Sbjct: 56  KPIFVLIGAGVSTGSKLPDFRGKQ 79


>Z50177-5|CAE46663.1|  289|Caenorhabditis elegans Hypothetical
           protein F46G10.7b protein.
          Length = 289

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/29 (58%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
 Frame = +2

Query: 293 KIITLSGAGISTSA--GIPDFRSPETGLY 373
           K++ +SGAGIST +  GIPD+RS + GLY
Sbjct: 29  KLLVISGAGISTESVPGIPDYRSKDVGLY 57


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
 Frame = +3

Query: 18  FLRKMSANSP---PGKSGGHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLG 188
           F R   +++P   PG +   +T   S +N   TT  E  +N F DL     +    + LG
Sbjct: 322 FGRNTESSTPSKSPGSTSSSDTTPSSNENGKETTPFEMTKNPFNDL-----KTIRPIYLG 376

Query: 189 LFS-PQDLEPAEPPEKVLD 242
             S  +D EP E   K  D
Sbjct: 377 SSSDEEDDEPLEDISKATD 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,881
Number of Sequences: 27780
Number of extensions: 394850
Number of successful extensions: 1020
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)