Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021353
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 85  DSSTVS*PPLFPGGEFADILRKNTKL 8
           D+  ++   +  GGEF D+ R   KL
Sbjct: 629 DAGYITIEAIIGGGEFGDVCRGKLKL 654


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 SMESLRNMFRDLDVDDVRMYLALKLGLFSPQDL 209
           ++  L   FRDL + D+R    L +G F   +L
Sbjct: 351 TIPELNEEFRDLRLQDLRPLATLGVGGFGRVEL 383


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 530  RKGSYYVIIHKTLTH*SEEPAF--PKKN*SKHTE 625
            R GSYY + H TL +  +E     P+K   K ++
Sbjct: 1064 RAGSYYGVPHSTLEYKVKERHLMRPRKRDQKQSD 1097


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 130 ICFAISTWMTFECT 171
           +C AIS+ M +EC+
Sbjct: 106 VCVAISSRMEYECS 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,596
Number of Sequences: 438
Number of extensions: 4766
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)