Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021348
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    64   1e-11
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    32   0.090
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    30   0.28 
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   0.48 
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   2.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   2.6  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   3.4  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   4.5  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   5.9  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.9  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   7.9  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    25   7.9  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
 Frame = +3

Query: 327 STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTLPHLEKEQF-NLQWVYNIL 503
           ST+  VK+T+I+PA++ H+ K+S Q+  +V ETPE+Y ++T P +E ++   +QWV NIL
Sbjct: 88  STLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKPFIETQRGPQIQWVENIL 147

Query: 504 EGKA 515
             KA
Sbjct: 148 THKA 151



 Score = 38.7 bits (86), Expect = 8e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +2

Query: 509 KSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLL 619
           K+E +RIV ++     GF+++PDLKWD  T   L L+
Sbjct: 150 KAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLM 186



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +1

Query: 106 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDL 240
           K+F  EKIL ++T  K   + GK +++  VAL+L EK AF  N +
Sbjct: 13  KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTI 55


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +3

Query: 249 GLFSKETQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETP 428
           G  S   QL T  ++    + ECF  S+ N  KTT++    +  +  F +  +++   +P
Sbjct: 226 GALSAPGQLYTVTDSKARVHLECFGSSSSNN-KTTVLVEGGEVSVHPFKEWLLNLQHTSP 284

Query: 429 ELYKE 443
           +LY+E
Sbjct: 285 DLYEE 289


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 294 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 395
           D+Y ++     S INGV  ++IYPA +  I+K S
Sbjct: 34  DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 230 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 120
           S+K FF     A+PL ++NFP   A+F+     N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 112 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYSPK 264
           FVLE+ L  N   KT    G+   K+GV L+   K  +  N  S E +  K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRK 481


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 321 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTL-PHLEKEQFNL 482
           PPS +N  +T + +    + + K++++++ +    PE +  L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 248 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 150
           S L++++++  FFSN  S+  L   +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 420 ETPELYKELTLPHLEKEQFNLQWVYNILEGK 512
           + P  Y  LTLP+L  E+  LQ++  + +G+
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGE 282


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 260 QRNSAENVFRERYLRKLRVFPAFDYKR 340
           +R SA +  R+R++RK+RV    D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 121 PKQSLSILTDCHLDCCRFHC 62
           P   LS+L D  + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 565 HESFLFTLIVMYNSILLAFPSRMLYTHCKLN 473
           H   +  L  + N I LAF  R   TH KL+
Sbjct: 418 HTGLILALFYLTNLIALAFSFRAAATHSKLS 448


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 306 NFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKE 443
           N    P ST++ V+    + AT++    F + ++ +VLE+  +YK+
Sbjct: 208 NLATSPASTVSRVRALYDFAATEQGELSFKKGDIILVLES--VYKD 251


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 347 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGE*PSSLRSFSLK 222
           FH  + ++RET+ V+ N +   +    FFGE  S  R    K
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEIESRTREAKKK 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,795
Number of Sequences: 5004
Number of extensions: 53502
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)