Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021348
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    30   1.5  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    29   4.6  
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325...    28   6.1  

>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 583 VGRSYQRDVVFIGLLSDKET*KALEIWTSSFY 678
           VG ++  ++ F+G L   +   A+E WT+SFY
Sbjct: 30  VGAAFLAEIAFLGRLDMAKNAAAVESWTTSFY 61


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 275 ENVFRERYLRKLRVFPAFDYKRCENYNNLPSH**AYCQI 391
           E+   ER +R L   PA   KRC N NNL ++   +CQI
Sbjct: 7   EDERNERIIRGLLKLPA--NKRCINCNNLTTNVATFCQI 43


>01_06_1506 +
           37830468-37830600,37830703-37830920,37832078-37832529,
           37832595-37833402,37834986-37835073,37835196-37835299,
           37835402-37835483,37836670-37836923
          Length = 712

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 266 FFGE*PSSLRSFSLKAFFS 210
           F+GE P SLRSFS+  F S
Sbjct: 452 FYGEAPESLRSFSMALFLS 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,647,128
Number of Sequences: 37544
Number of extensions: 307843
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)