Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021348
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7588| Best HMM Match : DcpS (HMM E-Value=0)                         56   4e-10
SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                    33   0.29 
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   31   0.89 

>SB_7588| Best HMM Match : DcpS (HMM E-Value=0)
          Length = 446

 Score = 56.4 bits (130), Expect(2) = 4e-10
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = +3

Query: 252 LFSKETQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLE 422
           + SK+T+L     ND+YG +  +P  T N +KTT+IYPAT +HIA  S Q V+ +LE
Sbjct: 235 VLSKDTKLSVDMRNDVYGQYIGYPAPTANTIKTTVIYPATAQHIA--STQWVYNILE 289



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +2

Query: 506 RKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLGYCQTK 637
           +K+E +R+V ++   + GFVLLPD+KWD    E LYL+  C  +
Sbjct: 290 KKAETERVVFEDGDPETGFVLLPDMKWDQQQVENLYLIAICHKR 333



 Score = 25.4 bits (53), Expect(2) = 4e-10
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +3

Query: 483 QWVYNILEGKA 515
           QWVYNILE KA
Sbjct: 282 QWVYNILEKKA 292


>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 444 LTLPHL--EKEQFNLQWVYNILEGKASKIELYMTIRV 548
           LT PHL   K+ FNLQW+  I  G  S + LY+ + +
Sbjct: 50  LTGPHLMKNKKAFNLQWIMVIYNGMMSLLNLYIFLEM 86


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 169 QPHKLFSC*CYCSIFSPKQSLSILTDCHLDCCRFH 65
           QPH    C   CS  +P  +L   T CH+DCC FH
Sbjct: 833 QPHTAAVCPQPCS--AP--TLCYHTGCHVDCCAFH 863


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,478
Number of Sequences: 59808
Number of extensions: 385401
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)