Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021348
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY079166-1|AAL86013.1| 311|Caenorhabditis elegans heat shock-li... 84 1e-16
AL132858-5|CAB60481.1| 311|Caenorhabditis elegans Hypothetical ... 84 1e-16
Z81118-8|CAB03326.3| 297|Caenorhabditis elegans Hypothetical pr... 26 0.82
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 28 7.3
U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine rece... 28 7.3
>AY079166-1|AAL86013.1| 311|Caenorhabditis elegans heat shock-like
protein protein.
Length = 311
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = +3
Query: 270 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELT 449
QL+ NDI+G++ +N +K+ +IYP D+ IAK+ Q+E ++ ETPELY+ +T
Sbjct: 77 QLQEISRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELYETVT 136
Query: 450 LPHLEKEQFNLQWVYNILEGKASKIE 527
P++EK Q NL WVYN LE K S+++
Sbjct: 137 RPYIEKYQLNLNWVYNCLE-KRSEVD 161
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 506 RKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLGYC 628
++SE D+IV ++ + GFVLL D+KWDG T E LY+L C
Sbjct: 156 KRSEVDKIVFEDPDNENGFVLLQDIKWDGKTLENLYVLAIC 196
>AL132858-5|CAB60481.1| 311|Caenorhabditis elegans Hypothetical
protein Y113G7A.9 protein.
Length = 311
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = +3
Query: 270 QLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELT 449
QL+ NDI+G++ +N +K+ +IYP D+ IAK+ Q+E ++ ETPELY+ +T
Sbjct: 77 QLQEISRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELYETVT 136
Query: 450 LPHLEKEQFNLQWVYNILEGKASKIE 527
P++EK Q NL WVYN LE K S+++
Sbjct: 137 RPYIEKYQLNLNWVYNCLE-KRSEVD 161
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 506 RKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLGYC 628
++SE D+IV ++ + GFVLL D+KWDG T E LY+L C
Sbjct: 156 KRSEVDKIVFEDPDNENGFVLLQDIKWDGKTLENLYVLAIC 196
>Z81118-8|CAB03326.3| 297|Caenorhabditis elegans Hypothetical
protein T10G3.3 protein.
Length = 297
Score = 26.2 bits (55), Expect(2) = 0.82
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 492 YNILEGKASKIELYMTIRVKRKDSC 566
Y L+ K +E+ T+ +KRK SC
Sbjct: 74 YECLKEKDGTVEIRRTLNIKRKKSC 98
Score = 23.4 bits (48), Expect(2) = 0.82
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 330 TINGVKTTIIYPATDKHIAKFSQQEVH 410
T NG KTT+I TD+ + Q VH
Sbjct: 42 TKNGWKTTVIGCKTDEGVHVLPGQTVH 68
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +3
Query: 267 TQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKEL 446
T++K E +Y + FP TI+ DKHIA F+ ++L + E E
Sbjct: 289 TKIKKIKEGSVYSSIPIFPGGTIS-----------DKHIAAFTDGAAAVILASQEAVSEQ 337
Query: 447 TLPHLEK 467
L L +
Sbjct: 338 NLKPLAR 344
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEK-NAFKENDLSEEGYSPKK 267
++++ + L N N+K CV+ + K+G E+ N+ EN ++ + SPKK
Sbjct: 1020 EEYIPKTFLTQNQNQKQKCVIVPTESKAGYETYHGERPNSSMENTIAPK-KSPKK 1073
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 106 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEK-NAFKENDLSEEGYSPKK 267
++++ + L N N+K CV+ + K+G E+ N+ EN ++ + SPKK
Sbjct: 1020 EEYIPKTFLTQNQNQKQKCVIVPTESKAGYETYHGERPNSSMENTIAPK-KSPKK 1073
>U80028-9|AAN73867.1| 372|Caenorhabditis elegans Serpentine
receptor, class w protein117 protein.
Length = 372
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 252 LFSKETQLKTFFENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 395
+F+ Q++ FE + FECFP T + T I+ + + + S
Sbjct: 82 IFTNFQQIEIIFERNTSIFFECFPTDTYGVILTRAIFDIVNDYSRRCS 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,400
Number of Sequences: 27780
Number of extensions: 299471
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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