Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021348
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 / ATP-sul...    29   2.2  
At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CYP79B2...    29   2.9  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    29   2.9  
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr...    28   5.1  
At5g41630.1 68418.m05058 F-box family protein contains F-box dom...    28   6.8  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   6.8  

>At1g19920.1 68414.m02497 sulfate adenylyltransferase 2 /
           ATP-sulfurylase 2 (ASA1) (MET3-1) (APS2) identical to
           ATP sulfurylase (APS2) [Arabidopsis thaliana] GI:1575324
          Length = 476

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 447 TLPHLEKEQFNLQWVYNILEGKASKIELYM 536
           T+P ++  Q +L+WV+ I EG AS ++ +M
Sbjct: 91  TMPKVKLNQIDLEWVHVISEGWASPLKGFM 120


>At4g39950.1 68417.m05657 cytochrome P450 79B2, putative (CYP79B2)
           identical to cytochrome P450 (79B2) SP:O81346 from
           [Arabidopsis thaliana]
          Length = 541

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 336 NGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKELTLPHLEKEQFNLQWVYNILEGKA 515
           NG KT +I P  D+   K  ++ V   L  P  ++ L     E+      WVYN+++   
Sbjct: 137 NGYKTCVITPFGDQF--KKMRKVVMTELVCPARHRWLHQKRSEENDHLTAWVYNMVKNSG 194

Query: 516 SKIELYMT 539
           S    +MT
Sbjct: 195 SVDFRFMT 202


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 425 SFQHNMNFLLAKFGNMLISGWVDY--CSFHTVYSRRRETLEVSVNIVLEKRFQLS 267
           S  HNMN  L  +G+ L+  WV +  C  + + +R     E+S  +      QLS
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLS 498


>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 509

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 346 KLQ*STQP-LISILPNLASKKFILCW 420
           KL   TQP L +++PNLA K  IL W
Sbjct: 51  KLHDGTQPDLSTVIPNLAMKSTILSW 76


>At5g41630.1 68418.m05058 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 456 HLEKEQFNLQWVYNILEGKASKIELYMT 539
           H+  E++ L W+ N+L+   S I LY++
Sbjct: 103 HIINERWVLDWIQNVLKRDVSDIRLYVS 130


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 273 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 398
           +KTF F  D + +F+ F     +  KT ++ PAT+KH+ + S+
Sbjct: 9   VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,503
Number of Sequences: 28952
Number of extensions: 270190
Number of successful extensions: 652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)