Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021347
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    33   0.035
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    31   0.18 
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    31   0.18 
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    27   3.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   4.0  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   6.9  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.1  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +2

Query: 329 KLGSRDCPVIHLKTEKPSDLGVHINTTFSIASSKNKAFVH--FKFYAKCHMYGS*LFHSL 502
           K+  RD P  +   ++P DLG  +    ++  +  K FVH     ++ C +Y S   H L
Sbjct: 327 KVSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYNSHPDHPL 386

Query: 503 LLWXEMILMRRQLDMIKTI 559
            +  +  +  + L++I  I
Sbjct: 387 RVHAQ-FMKDKSLELINLI 404


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 446  EQKLYSWKTLSRMLYLYVHQGLMVSLFLDV*LG-NLESLVLHLCF 315
            EQK +S+K     + + V+QGL++ LF    +G   E  +L +CF
Sbjct: 900  EQKCFSYKNFISCVLISVYQGLIIQLFTFYLIGFEEEGKMLAVCF 944


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +2

Query: 254 NLGEGVPLNSSGANIFLNTGKSKDAKLGSRDCPVIHLKTEKPSDLGVHINTTFSIASS 427
           +L  GVP +++GANI  N+  +    + S    V H+  + PS LG H     SI  S
Sbjct: 89  SLNAGVPPSNTGANITTNSNNNAQT-ISSSSQSVGHI--DNPSGLGTHGKVRLSIKLS 143


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 336 PSFASLLLPVFKNIFAPDEFNGTP 265
           P+FA  LLP   +I +PD  +G P
Sbjct: 125 PAFARTLLPPVSSIASPDILSGAP 148


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 103 VNKTSAKLMLRLISTQFRFDANANARVNSSTTLHR 207
           V +T A+L  RL   + R  +  N   N+STT HR
Sbjct: 103 VKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHR 137


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 402 IQHSR*RLPRIKLLFILNFMLSVICMVLS 488
           ++H     P + L++I + ++SV C++LS
Sbjct: 250 VKHYVHEYPTLDLIYIFSALMSVFCLLLS 278


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 634 CLRTAVLGQPRALCTSVSC 578
           CL   ++  PR+LCT  SC
Sbjct: 360 CLEPLIILWPRSLCTEESC 378


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 350  GNLESLVLHLCFYRCSKIYLHLTSLMEHLPLNYLPF 243
            G+L ++ L+     C K + +   + +HL  ++LPF
Sbjct: 1055 GHLNNIRLNCEVSNCKKCFSNYEDMFKHLQHSHLPF 1090


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,473
Number of Sequences: 5004
Number of extensions: 50691
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)