Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021347
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233...    30   1.3  
03_05_0348 - 23346182-23348022,23348118-23348148                       29   4.1  

>02_05_0181 -
           26522849-26522932,26523053-26523184,26523263-26523329,
           26523800-26524186,26524259-26524360,26524983-26525132,
           26525552-26525636,26525743-26525769,26525858-26526116,
           26526659-26526751,26526921-26527013,26527122-26527289,
           26527436-26527594,26528214-26528273,26528392-26528487
          Length = 653

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 283 VRCKYIFEHR*KQRCKTRLSRLPSYTSKNRETIRP 387
           V C+YIF H+ +Q CKT +  +   T  N+E  RP
Sbjct: 125 VPCEYIFGHKDQQTCKTWVEHIK--TCINKEQDRP 157


>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 429 LEDAIENVVFICTPRSDGFSVFRCITGQSREPSFASLLLPVFKNIFA-PDEFNGTPSPKL 253
           L DAI   +F          V RC  G   E   A+L   +  ++ A P+ F    S  +
Sbjct: 185 LVDAIALGLFCVVATLGAVPVIRCAGGGPAEMVAAALDARLRDHLIAKPNLFTEAASTAV 244

Query: 252 SSFQRPL 232
           +SFQRPL
Sbjct: 245 ASFQRPL 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,266,057
Number of Sequences: 37544
Number of extensions: 290791
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)