Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021347
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.4  
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 28   7.3  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    28   7.3  
SB_472| Best HMM Match : Cas1p (HMM E-Value=0)                         27   9.7  

>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 426 EDAIENVVFICTPRSDGFS-VFRCITGQSREPSFASLLLPVFKNI 295
           ED++ + + IC P + G+S  ++C+     +  FA+  L V  N+
Sbjct: 693 EDSMGSPLIICEPNNRGYSGTYKCVATNKLDTDFATGSLNVLGNV 737


>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 314 YRCSKIYLHLTSLMEHLPLNYLPFNVHYKYYCSIYERCSVVLLFTRAL 171
           Y  S++   +  +  HLP++++P+ V +  Y     R   +L  TR L
Sbjct: 104 YPLSRVLYPVYRVFYHLPVSFIPYTVSFIIYPRPLSRIPCLLSSTRVL 151


>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 254 NLGEGVPLNSSGA--NIFLNTGKSKDAKLGSRDCPV-IHLKTEKPS 382
           N  +  P +SS    N  + TG+SKD K+ + D P+ I  K +K S
Sbjct: 494 NTAQSSPKSSSAGSGNTVIQTGQSKDKKVPAADSPITIPSKEDKVS 539


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 390 PRSDGFSVFRCITGQSREPSFASLLLP 310
           P S+ + VFRC     R PS  +LL+P
Sbjct: 330 PPSNSWHVFRCSRQHPRPPSSVTLLIP 356


>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
          Length = 932

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 432 IKLLFILNFMLSVICMVLSCSIAFYY 509
           +K+LF LNF++ + C+V +     YY
Sbjct: 627 LKMLFRLNFLVVITCIVTTNEYMLYY 652


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,914
Number of Sequences: 59808
Number of extensions: 361975
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)