Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021347
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical ...    29   2.1  
U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine rece...    28   4.9  
Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AC024779-4|AAK68484.1|  439|Caenorhabditis elegans Hypothetical
           protein Y43B11AL.1 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
 Frame = -1

Query: 347 NLESLVLHLCFYRCSKIYLHLTSLMEHLPLNY--LPFNVHYKYYCSIY-ERCSVV---LL 186
           NL SL+L+  F  C K+ +H T+  E  PL+   +   V  +   +IY  +C  V    +
Sbjct: 145 NLSSLLLNKNFTNCQKLEVHETAETEVCPLDLEEIVKEVRVEKEINIYTTQCETVRIEQI 204

Query: 185 FTRALALASNLNWVD----ISLNINF 120
           F     +  N  W+     +SLN  F
Sbjct: 205 FNLETVILHNAQWITLPDLLSLNCRF 230


>U97008-6|AAB52307.1|  323|Caenorhabditis elegans Serpentine
           receptor, class h protein275 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 338 SLVLHLCFYRCSKIYLHLTSLMEHLPLNYLPFNVHYKYYC-SIYERCSVVL 189
           ++ +   F RC  I   +  L+  LP+ YL  +  +K YC S    C +++
Sbjct: 229 TMKMQTTFLRCLNIQTSIPLLILLLPMGYLVISRIFKIYCQSANNLCFIII 279


>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 296 YLHLTSLMEHLPLNYLPFNVHYKYYCSIYERCSVV 192
           YL +     H  L +L  N   +Y+CS+  RC +V
Sbjct: 52  YLFIFIRSMHFNLTFLFMNYGGQYFCSMLSRCIIV 86


>Z68114-9|CAA92156.1|  320|Caenorhabditis elegans Hypothetical
           protein F17A2.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 387 LVYI*IQHSR*RLPRIKLLFILNFMLSVICMVLSCSIAF 503
           L+Y+   HS   L  +K+  +   +  +I +V+SCS  F
Sbjct: 28  LIYLIFYHSPTHLKMLKVFLLNTSLFQIILVVVSCSSQF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,492
Number of Sequences: 27780
Number of extensions: 280546
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)