Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021347
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25330.1 68415.m03030 meprin and TRAF homology domain-contain...    27   7.9  
At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, p...    27   7.9  

>At2g25330.1 68415.m03030 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 693

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 314 KSKDAKLGSRDCPVI---HLKTEKPSDLGVHINTTFSIASSKN 433
           KSK  ++G+RDC +I     +++ PS L + +  T S +SS +
Sbjct: 385 KSKRFQIGNRDCRLIVYPRGQSQPPSHLSIFLEVTDSRSSSSD 427


>At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase,
           putative similar to adventitious rooting related
           oxygenase ARRO-1 from Malus x domestica, gi|3492806;
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 312

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 363 RCITGQSREPSFASLLLPVFKNIFAPDEFNGTPSPKL 253
           +CI  + R    + LL PV +++ APDEF     P+L
Sbjct: 237 QCIEAKMRITIASFLLGPVDRDLEAPDEFVDAEHPRL 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,829,815
Number of Sequences: 28952
Number of extensions: 251131
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)