Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021346
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 92 8e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 51 1e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 44 2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 43 5e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 42 8e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.006
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 34 0.022
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.039
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 31 0.12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 31 0.21
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 30 0.36
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.48
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.48
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.64
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.64
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.84
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.5
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 28 1.5
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 2.6
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 3.4
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 26 4.5
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 26 5.9
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 5.9
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 91.9 bits (218), Expect = 8e-20
Identities = 41/86 (47%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVL-KDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGV 433
+L PF K+FY H V + EV EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLL 511
K +G++ PTPIQ Q WP+AMSG++++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMV 163
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
TGSGKTL+Y LPAIVHIN QP + GDGPI LVL + ++ C +F
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKF 218
Score = 32.3 bits (70), Expect = 0.068
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
APTRELA QIQQ FG +S +R
Sbjct: 202 APTRELAVQIQQECTKFGKSSRIR 225
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 51.2 bits (117), Expect = 1e-07
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKT+A++LP HI +Q P++ G+GPIA+++ + ++ C F
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPF 514
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +2
Query: 263 QPFNKNFY-DPHPTVLKDXYEVEEYRNKHE-VTVXGVEVHNPIQYFEEANFPDYVQQGVK 436
+ F K+FY +P EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLL 511
++GY++PT IQAQ P SG++++
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVI 459
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +2
Query: 335 RNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVL 623
+TGSGKT A+I+P I+ I+ PP+ + GP A+VL
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVL 331
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 625 APTRELAQQIQ 657
APTRELAQQIQ
Sbjct: 332 APTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +2
Query: 311 DXYEVEEYRNKHEVTVXGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 481
D + Y KH ++ + PI F+E + +++G+K YKEPTPIQA W
Sbjct: 139 DEEAYDRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATW 196
Query: 482 PIAMSGKNLL 511
P ++G++++
Sbjct: 197 PYLLAGRDVV 206
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHIN 575
+TGSGKT+A+ +PA+ ++N
Sbjct: 210 ETGSGKTVAFGIPALQYLN 228
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 350 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA-YQNG 526
V V G ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A Q G
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 527 FRQNVG 544
+ G
Sbjct: 217 SGKTAG 222
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
APTREL QI + + F + S+VR
Sbjct: 262 APTRELVCQIHEESRKFCYRSWVR 285
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + G+ G++ P+PIQ + PIA+SG+++LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQ 581
R K G+GKT A+++P++ ++ +
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTK 109
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L+A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVL 623
+ +TGSGKT AY++P + + Q I G AL+L
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLL 94
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 33.1 bits (72), Expect = 0.039
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N +++ V G+K+ TP+QA P+ + K+L+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVST 647
TGSGKTLAY+LP + + G G AL++ + ++T
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELAT 86
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N + +G+ +G++ PT IQ + P+A+ GK+++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP 584
TGSGKT A+I+P + + +P
Sbjct: 305 TGSGKTAAFIVPILERLLYRP 325
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.5 bits (68), Expect = 0.12
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQP 584
+TGSGKT A+ LP I + N P
Sbjct: 91 QTGSGKTAAFALPVIQELWNNP 112
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 377 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
N + FEE N + + +G+ GY+ P+ +Q++ G++++A
Sbjct: 18 NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIA 63
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQP 584
+TGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHI 572
KTGSGKTLA+I+P I ++
Sbjct: 84 KTGSGKTLAFIVPLIENL 101
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 29.5 bits (63), Expect = 0.48
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINN 578
+TGSGKT A+++P I H+ +
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS 133
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ + + + G+K PTPIQ + P+ + G++++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFG 678
APTRELAQQIQ+V G
Sbjct: 94 APTRELAQQIQKVVVALG 111
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +3
Query: 519 KTGSGKTLAYILPAI 563
KTGSGKTLA+++P I
Sbjct: 134 KTGSGKTLAFLIPTI 148
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.84
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 248 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 75
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 74 HDYFSDLVEDVYLNYGFFLTQG 9
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 572 YVHNCWQDVGQRFAGTRFGTPINSFQT*LSASLELEWASVLCNPLSLHL 426
YV NC ++ G T TP NS +T + +L + +L L LHL
Sbjct: 590 YVTNCREEQGAFCVSTYISTPDNSLRTLIVLALMALSSIILPLILQLHL 638
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPP 587
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPP 587
TG GK+L++++PA++ Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 540 LAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNS 656
L +IL A ++ Q I+ D P++L + + VST+NS
Sbjct: 266 LTFILRACPNLLTQSSIQPSDDPLSLEVANSETVSTSNS 304
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQP 584
KTGSGKT A+ LP I + P
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP 73
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +3
Query: 522 TGSGKTLAYILPAI 563
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 504 IYWRTKTGSGKTLAYILPAIVH 569
I + TGSGKTLA+ +P + H
Sbjct: 162 IIGKADTGSGKTLAFGIPILEH 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPP 587
TGSGKT+AY+ P + + P
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP 113
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQPP 587
+ KTG+GKTLA++L A + P
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKP 106
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
AP+RELA+QI V + G + V+
Sbjct: 191 APSRELARQIMDVVTEMGKYTEVK 214
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 92 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 12
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGW-PIAMSGKNLLAYQNGFRQNV 541
++ GY +P P+QA G+ P+ + L + G V
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQV 1094
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,066
Number of Sequences: 5004
Number of extensions: 54647
Number of successful extensions: 205
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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