Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021346
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 52 3e-07
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 46 3e-05
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 43 2e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 43 2e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 43 2e-04
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 40 0.002
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.005
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 37 0.012
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 37 0.012
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 37 0.016
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 37 0.016
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 37 0.016
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 32 0.45
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 32 0.45
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 32 0.45
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 32 0.45
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 32 0.45
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 31 0.60
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 31 1.0
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 31 1.0
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 30 1.4
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 30 1.4
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 30 1.4
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 30 1.4
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 30 1.4
AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical ... 30 1.8
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 2.4
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 3.2
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 3.2
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr... 28 7.3
U97196-8|AAB52457.3| 191|Caenorhabditis elegans Hypothetical pr... 27 9.7
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 27 9.7
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 27 9.7
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKDXY-EVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 439
Q FNKNFY+ H + + Y +V +N + V G++ P+ F +F + + ++
Sbjct: 223 QKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKLLMEAIRK 282
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
Y++PTPIQA P A+SG+++L
Sbjct: 283 SEYEQPTPIQAMAIPSALSGRDVL 306
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/35 (60%), Positives = 30/35 (85%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
KTGSGKT AY+ PAIVHI +QP ++ G+GP+A+++
Sbjct: 310 KTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAVIV 344
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +2
Query: 332 YRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Score = 34.3 bits (75), Expect = 0.084
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGD----GPIALVL 623
+TGSGKT A++LP +V I + P + R + GP A+++
Sbjct: 346 ETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIM 384
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFG 678
APTRELAQQI++ FG
Sbjct: 385 APTRELAQQIEEETNKFG 402
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 SLQPFNKNFYDPHPTVLK-DXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGV 433
+L P K+FY + V + + YE++++ + ++VT+ G V P+ F EA P + + +
Sbjct: 86 NLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELL 145
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+++PT IQ+ WPIAMSG+++++
Sbjct: 146 YGK-FQKPTVIQSISWPIAMSGRDIIS 171
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
KTGSGKTLA++LPA+VHI Q +RG+GP LVL
Sbjct: 174 KTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 628 PTRELAQQIQQVAADFGHT 684
PTRELAQQ+Q+V+ DF H+
Sbjct: 210 PTRELAQQVQEVSIDFCHS 228
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
KTGSGKTLA++LP HI +QP + GDGPIA++L
Sbjct: 349 KTGSGKTLAFLLPMFRHILDQPELEEGDGPIAVIL 383
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 269 FNKNFYDPHPTVLK-DXYEVEEYRNKHE-VTVXGVEVHNPIQYFEEANFPDYVQQGVKTM 442
F KNFY + + EV+ YR + + +TV G++ PI+ + + + +K
Sbjct: 263 FKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKF 322
Query: 443 GYKEPTPIQAQGWPIAMSGKNLL 511
Y +PT IQAQ P MSG++++
Sbjct: 323 EYSKPTSIQAQAIPSIMSGRDVI 345
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 45.6 bits (103), Expect = 3e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V G +V PI F + + +++++ +KT GY PTP+Q P G++L++
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMS 208
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
++Y N V V G V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 178
Query: 506 LLA 514
L++
Sbjct: 179 LMS 181
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHI 572
+TGSGKT A++LP I HI
Sbjct: 184 QTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
++Y N V V G V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 162
Query: 506 LLA 514
L++
Sbjct: 163 LMS 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHI 572
+TGSGKT A++LP I HI
Sbjct: 168 QTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
++Y N V V G V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 159
Query: 506 LLA 514
L++
Sbjct: 160 LMS 162
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHI 572
+TGSGKT A++LP I HI
Sbjct: 165 QTGSGKTAAFLLPIIQHI 182
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 308 KDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTPIQAQGWP 484
++ YE++ R + ++ G + PI F E FP + + + K G PT IQ QG P
Sbjct: 165 QEDYEIQ--RKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIP 222
Query: 485 IAMSGKNLL 511
+A+SG++++
Sbjct: 223 VALSGRDMI 231
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 623
TGSGKT+ ++LP ++ Q P R +GP L++
Sbjct: 236 TGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLII 272
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 365 VEVHNPIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKNLL 511
V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++ +
Sbjct: 76 VKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCI 125
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/22 (63%), Positives = 21/22 (95%)
Frame = +3
Query: 516 TKTGSGKTLAYILPAIVHINNQ 581
++TGSGKTLA++LPA++HI+ Q
Sbjct: 128 SQTGSGKTLAFLLPALLHIDAQ 149
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F +++ P +++ V+ GY TPIQ P+ GK++LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F +++ P +++ V+ GY TPIQ P+ GK++LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
P + F EAN + +Q+ V GY + TPIQ P+ G +++A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ N + + GY +PTPIQ P+A++GK++ A
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICA 190
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 374 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
H +++ V + ++ G+ +PTPIQ + P M GK+++A
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVA 66
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 374 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
H +++ V + ++ G+ +PTPIQ + P M GK+++A
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVA 66
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F EAN + +++ V GY + TPIQ P+ G +++A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 519 KTGSGKTLAYILPAI 563
KTGSGKTLA++LPAI
Sbjct: 113 KTGSGKTLAFLLPAI 127
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 504 IYWRTKTGSGKTLAYILPAIVH 569
+Y TG+GK+L Y LPA+VH
Sbjct: 197 VYVSLPTGAGKSLCYQLPAVVH 218
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP 584
TGSGKT+ Y+LP + + ++P
Sbjct: 165 TGSGKTICYVLPVLAAVGSKP 185
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -2
Query: 269 KVGVKRIPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 90
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 89 IPVTRHDYFSDLVEDVYLNYGFFLTQ 12
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -2
Query: 269 KVGVKRIPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 90
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 89 IPVTRHDYFSDLVEDVYLNYGFFLTQ 12
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -2
Query: 269 KVGVKRIPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 90
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 647 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 706
Query: 89 IPVTRHDYFSDLVEDVYLNYGFFLTQ 12
P+TRH+ + + E +Y G+ L Q
Sbjct: 707 APLTRHEILAKMAE-MYKEGGYGLNQ 731
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/86 (23%), Positives = 38/86 (44%)
Frame = -2
Query: 269 KVGVKRIPIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAI 90
++G K ++ +H + + P + + KSI + E S G T ++
Sbjct: 639 EMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEELDSDCGKTTFSSF 698
Query: 89 IPVTRHDYFSDLVEDVYLNYGFFLTQ 12
P+TRH+ + + E +Y G+ L Q
Sbjct: 699 APLTRHEILAKMAE-MYKEGGYGLNQ 723
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 498 ERIYWRTKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLGAYQRVST 647
+ I R +TGSGKT A+++P + + + G GP A+++ + + T
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLVQKLIAESKTNDGSVGPSAVIIAPTKELIT 177
>AC091124-2|AAK27879.2| 1114|Caenorhabditis elegans Hypothetical
protein Y47A7.1 protein.
Length = 1114
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 11 PASERIHSLNKHLQLNPKNNHVW 79
PAS ++H L++ LQLN N+ W
Sbjct: 773 PASHQLHCLSRALQLNKANDSAW 795
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 97 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 213
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 489 LCLERIYWRTKTGSGKTLAYILPAIVHINN 578
L L + + TGSGKTLA++LP + I N
Sbjct: 44 LNLSDVVVESPTGSGKTLAFVLPMMRMIQN 73
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFG 678
APTRELAQQIQ+V + G
Sbjct: 104 APTRELAQQIQKVMSALG 121
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFG 678
APTRELAQQIQ+V + G
Sbjct: 104 APTRELAQQIQKVMSALG 121
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 152 RRIIAEFVASSKFGTTVSTAIIPV 81
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 152 RRIIAEFVASSKFGTTVSTAIIPV 81
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
protein F15D4.1 protein.
Length = 1529
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 187 LEALVGKKNSLEGRTCDAQIGILFTPTFQQK 279
LEAL ++G+ D + +LF P FQ K
Sbjct: 470 LEALYESDGEIQGQRIDIAVQLLFIPFFQSK 500
>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
protein F15D4.1 protein.
Length = 1529
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 187 LEALVGKKNSLEGRTCDAQIGILFTPTFQQK 279
LEAL ++G+ D + +LF P FQ K
Sbjct: 470 LEALYESDGEIQGQRIDIAVQLLFIPFFQSK 500
>U97196-8|AAB52457.3| 191|Caenorhabditis elegans Hypothetical
protein B0207.2 protein.
Length = 191
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -1
Query: 582 VGYLCAQLLARCRPTFCRNPFWYAN 508
VG + A L P C NP WY N
Sbjct: 21 VGTMLACALCIANPGACANPMWYTN 45
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
P+ V + ++ MG+ EPT IQ+ P A+
Sbjct: 163 PNEVLEAIEQMGFSEPTEIQSAVLPAAV 190
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI 572
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI 572
TGSGKTLA+++P ++ +
Sbjct: 782 TGSGKTLAFLIPFVIKL 798
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +2
Query: 248 GFFSLQPFNKNFYDPHPTVLKDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQ 427
G+ ++QP+ K + P + D Y E+RN+ + +Q+ E A F ++
Sbjct: 250 GYVTIQPWVKVHFPGVPKEIADPYNQIEFRNQ-----AASQTDCLLQFKESARFITFLD- 303
Query: 428 GVKTMGYKEPTPIQAQGWPIAMSGKNLLAY 517
+ + P A+ + M GK LAY
Sbjct: 304 -LDDVLIPRLAPTYAEEFQKLMDGKKKLAY 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,676
Number of Sequences: 27780
Number of extensions: 308287
Number of successful extensions: 1045
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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