Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021346
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 97 1e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 91 9e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 91 9e-19
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 69 4e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 66 2e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 3e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 60 1e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 59 3e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 51 6e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 48 4e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 7e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 41 0.001
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 38 0.005
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.006
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 38 0.006
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.026
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 35 0.045
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.045
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 35 0.059
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 35 0.059
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 35 0.059
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 35 0.059
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.078
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.078
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 34 0.078
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 34 0.078
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 34 0.10
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.14
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.18
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 32 0.32
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 31 0.73
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 31 0.73
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 31 0.96
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 30 1.3
At2g25460.1 68415.m03049 expressed protein 30 1.3
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 30 1.7
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 29 2.2
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 29 2.9
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.9
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 3.9
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 3.9
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 29 3.9
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 29 3.9
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 29 3.9
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 29 3.9
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 5.1
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 5.1
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 5.1
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 28 6.8
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 28 6.8
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 28 6.8
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 28 6.8
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 28 6.8
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 28 6.8
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 9.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +2
Query: 242 RLGFFSLQPFNKNFYDPHPTVLK-DXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDY 418
+L L PF KNFY P V EVEEYR E+TV G ++ P++ F + FPDY
Sbjct: 50 KLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDY 109
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
V + VK G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVL + ++ +F
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
APTRELA QIQQ A+ FG +S ++
Sbjct: 179 APTRELAVQIQQEASKFGSSSKIK 202
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTV-LKDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+L
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
APTRELA QIQ+ + FG S VR
Sbjct: 245 APTRELAVQIQEESRKFGLRSGVR 268
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 90.6 bits (215), Expect = 9e-19
Identities = 39/92 (42%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTV-LKDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPD 415
P+ F +L F KNFY PTV +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+L
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYVR 696
APTRELA QIQ+ + FG S VR
Sbjct: 245 APTRELAVQIQEESRKFGLRSGVR 268
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E Y +HE+TV G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 506 LLA 514
++A
Sbjct: 198 IVA 200
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKTL Y++P +H+ R GP LVL + ++T +F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYV 693
+PTRELA QIQ+ A FG +S +
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRI 259
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E Y +HE+TV G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 506 LLA 514
++A
Sbjct: 198 IVA 200
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKTL Y++P +H+ R GP LVL + ++T +F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYV 693
+PTRELA QIQ+ A FG +S +
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRI 259
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/63 (46%), Positives = 41/63 (65%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E Y +HE+TV G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G++
Sbjct: 138 EAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRD 197
Query: 506 LLA 514
++A
Sbjct: 198 IVA 200
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKTL Y++P +H+ R GP LVL + ++T +F
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKF 253
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYV 693
+PTRELA QIQ+ A FG +S +
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRI 259
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 66.1 bits (154), Expect = 2e-11
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVL-KDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P NK+FY+ ++ E +YR + + V G +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
Y++PT IQ Q PI +SG++++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVI 269
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/34 (58%), Positives = 28/34 (82%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALV 620
KTGSGKT A++LP IVHI +QP ++R +GPI ++
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVI 306
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +2
Query: 272 NKNFYDPHPTVLKDXYE---VEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTM 442
NK+ PH D VE YR +HEVT G + P FE + P + + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSA 453
Query: 443 GYKEPTPIQAQGWPIAMSGKNLLA 514
G+ PTPIQAQ WPIA+ ++++A
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVA 477
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKTL Y++PA + + + R +GP L+L + ++T RF
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRF 530
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYV 693
APTRELA QIQ A FG +S +
Sbjct: 514 APTRELATQIQDEALRFGRSSRI 536
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKDXYE-VEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQAQ PI MSG++ +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCI 437
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 475
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLK-DXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKT 439
+PF KNFY + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
+ Y++P PIQ Q PI MSG++ +
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCI 570
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVL 623
KTGSGKTL ++LP + HI +QPP+ GDGPI LV+
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVM 608
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/64 (32%), Positives = 39/64 (60%)
Frame = +2
Query: 320 EVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
+++ R + +TV G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG
Sbjct: 75 QMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSG 134
Query: 500 KNLL 511
++++
Sbjct: 135 RDMI 138
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 623
TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVI 179
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/59 (33%), Positives = 36/59 (61%)
Frame = +2
Query: 335 RNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
R + + V G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
Score = 35.1 bits (77), Expect = 0.045
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVL 623
TGSGKTL ++LP I+ + PI G+GPI L++
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIV 228
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.4 bits (100), Expect = 7e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 353 TVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 YEVEEYRNKHEVTVXGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 490
++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P A
Sbjct: 85 HDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAA 144
Query: 491 MSGKNLLA 514
++GK+LLA
Sbjct: 145 LTGKSLLA 152
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 335 RNKHEVTVXGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R ++ + V G + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLLA 514
A
Sbjct: 180 ECFA 183
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 KDXYEVEEYRNKHEVTVXGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 481
+D E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ W
Sbjct: 88 EDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTW 145
Query: 482 PIAMSGKNLL 511
P + G++L+
Sbjct: 146 PFLLDGRDLI 155
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHI 572
KTGSGKTLA+ +PAI+H+
Sbjct: 159 KTGSGKTLAFGIPAIMHV 176
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 260 LQPFNKNFYDPHPTVLKDXYEVEEYRNKHEVTVX--GVEVHNPIQYFEEANFPDYVQQGV 433
+ PF + +P P + V + ++ + G V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 332 YRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVL 623
+TGSGKT A++LP + +I+ PP+ +GP A+V+
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVM 395
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGH 681
APTRELAQQI++ F H
Sbjct: 396 APTRELAQQIEEETVKFAH 414
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V + G+ P+PIQAQ WPIAM ++++A
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVA 271
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLGAYQRVSTTNSASCCRF 674
KTGSGKTL Y++P +H+ R GP LVL + ++T +F
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQIQVEALKF 324
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 326 EEYRNKHEVTVXGVEVHNPIQYFEEANFPD 415
E Y KHE+TV G +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 625 APTRELAQQIQQVAADFGHTSYV 693
+PTRELA QIQ A FG +S +
Sbjct: 308 SPTRELATQIQVEALKFGKSSKI 330
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE N V +K GYK PTPIQ + P+ +SG +++A
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVL 623
TG+GKT+AY+ P I H+ + P + R G ALV+
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVI 110
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLL 511
MG++ PT +QAQ P+ +SG+++L
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQPPIRR 596
+ KTG+GKT+A++LPAI + PP R
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 350 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
+ G V P+ F E + + + ++ Y +PTP+Q PI +G++L+A
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMA 188
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + G+ G++ P+PIQ + PIA++G+++LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 34.7 bits (76), Expect = 0.059
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + G+ G++ P+PIQ + PIA++G+++LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 350 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 34.7 bits (76), Expect = 0.059
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 350 VTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 34.3 bits (75), Expect = 0.078
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
FE+ + +G+ G+++P+PIQ + PIA++G ++LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.3 bits (75), Expect = 0.078
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 33.9 bits (74), Expect = 0.10
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 320 EVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLLA 514
K+++A
Sbjct: 84 KDVVA 88
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAI 563
R KTGSGKTLAY+LP +
Sbjct: 89 RAKTGSGKTLAYLLPLL 105
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQPPIRR 596
+ KTG+GKT+A++LP+I + PP R
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
F++ +G++ G+K T +Q P+ + GK++LA
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILA 122
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQPP 587
+ KTG+GKT+A++LP+I + PP
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 31.1 bits (67), Expect = 0.73
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE + D + +K MG+ T IQA+ P M G+++L
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVL 195
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 498 ERIYWRTKTGSGKTLAYILPAI 563
E + +TGSGKTLA+++PA+
Sbjct: 192 EDVLGAARTGSGKTLAFLIPAV 213
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQP 584
R +TG GKTLA++LP + + N P
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 489 LCLERIYWRTKTGSGKTLAYILPAIVHINNQ 581
LC I +TGSGKTLA+++P + ++ +
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 519 KTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLGAYQRVSTTNSA 659
+TGSGKTLA+++PA+ + + R G G I + + T N A
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVA 181
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 204 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 88
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVL 623
R +TG+GKTLA+ +P I I RG P+ LVL
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVL 184
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
FE ++ + K +G ++PTP+Q P ++G+++L
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREFFF 204
VGVK I W + +LPSR+F F
Sbjct: 81 VGVKEIEGWTARLLPSRQFGF 101
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI 572
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 522 TGSGKTLAYILPAI 563
TGSGKTLAY+LP +
Sbjct: 158 TGSGKTLAYLLPIV 171
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = -2
Query: 245 IWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKF-GTTVSTAIIPVTRH- 72
+W VL + F F K R ++S A R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 71 -DYFSDLVEDVYLNYGFFLTQGPP 3
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAI 563
+ KTG+GK++A++LPAI
Sbjct: 418 KAKTGTGKSMAFLLPAI 434
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPP 587
TGSGKTLA++LP I I N+ PP
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHI---NNQPP 587
TGSGKTLA++LP I I N+ PP
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAI 563
+ KTG+GK++A++LPAI
Sbjct: 371 KAKTGTGKSMAFLLPAI 387
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 522 TGSGKTLAYILPAIVHINNQPPIR 593
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 275 KNFYDPHPTVLKDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQ 427
K D H +L +E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 275 KNFYDPHPTVLKDXYEVEEYRNKHEVTVXGVEVHNPIQYFEEANFPDYVQQ 427
K D H +L +E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVHINNQ 581
R KTG+GKTLA+ +P I + +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEE 167
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 513 RTKTGSGKTLAYILPAIVH-INNQPPIRRGDGPIALVL 623
R +TG+GKTLA+ +P I I RG P LVL
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVL 196
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 519 KTGSGKTLAYILPAIVHINNQ 581
++GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 266 VGVKRIPIWASHVLPSREF 210
VGVK I W + +LPSR+F
Sbjct: 81 VGVKEIEGWTARLLPSRQF 99
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 85 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 231
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,945,773
Number of Sequences: 28952
Number of extensions: 285367
Number of successful extensions: 956
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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