Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          26   0.27 
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           25   0.62 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.6  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +1

Query: 487 DIIGYSRIKNKDSLEKA-LSEHGAVVEGHALSVAVESRXRPPCWWGCPTRPARTTASSVR 663
           D + YS+ +N+  L+     +     E +  + A+     PP  W CP   A    SSV 
Sbjct: 8   DEMSYSQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVL 67

Query: 664 DCGDVAHIHEFSKTKYK 714
               V  I E    + K
Sbjct: 68  QLPTVTEIQETQPQRTK 84


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +1

Query: 493 IGYSRIKNKDSLEKA-LSEHGAVVEGHALSVAVESRXRPPCWWGCPTRPARTTASSVRDC 669
           + YS+ +N+  L+     +     E +  + A+     PP  W CP   A    SSV   
Sbjct: 1   MSYSQFENQAVLQSYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPPYMSSVLQL 60

Query: 670 GDVAHIHEFSKTKYK 714
             V  I E    + K
Sbjct: 61  PTVTEIQETQPQRTK 75


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 MAYRIKLSMETTESLLKAL 252
           + +R+K S E  E+LLK L
Sbjct: 407 VCFRLKASNEINEALLKRL 425


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,903
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)