Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021344
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.6
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 4.7
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 26 4.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 6.3
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 6.3
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 8.3
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 8.3
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 91 VAQKKGRGVKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 237
V+ KK + R +P P K S+KKQK ++K K + + ++ES
Sbjct: 49 VSPKKSKKEAKRASSPEPSKKSVKKQK-KSKKKEESSSESESESSSSES 96
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 674 SPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPSTTAPCSDS 537
SP R+E+AVV HPH S + S ++P S S
Sbjct: 905 SPAFRSEEAVVEVADEDHPHASEAERAHSYSNRKQASSESSPESQS 950
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 91 VAQKKGRGVKLRQPNPSPLKMSLKKQKFQN-KPKRTMA 201
V Q GR + P+PSP+ S + Q+ P R MA
Sbjct: 458 VIQTSGRPKSMAPPSPSPISPSFPLHEIQSPMPNRRMA 495
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 421 KTRGNQYSQTWSNHCN*TDHNSDIIGYSRIKNKDSLEKALSEHGAVVEGHALSVAVESRX 600
++R ++ + ++ CN NSD SR+ +K + S +V + S+ E R
Sbjct: 67 RSRDDEEANSFEGSCN----NSDQSWTSRVTSKKNEAGTESGDASVRRIYVTSIPEEHRH 122
Query: 601 RPPCWWGCPTRPARTT 648
P W+ P+ RTT
Sbjct: 123 LPSQWF--PSNKIRTT 136
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 365 NLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKRRCR 544
N+ + L+D+ E LKE +KHG N++ P+ + + E T +++RR
Sbjct: 571 NVNPTDLWDWAE-LKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVL 629
Query: 545 S 547
S
Sbjct: 630 S 630
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 570 VPLHHGAVLRQRLFQTVFVFDSTIAD 493
VP+H G V++ L +T FD +I D
Sbjct: 147 VPIHPGYVMKTHLEETQVKFDPSITD 172
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 365 NLPSSYLFDYQEKLKELFSKH---GEINTVKRGPIIVT 469
N P S L DYQ K+ E S E+NT++ P V+
Sbjct: 255 NTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 362 ENLPSSYLFDYQEKL--KELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKR 535
E LP+ Y ++ L KE K+G I P ++ + +T + V SKT T+ K
Sbjct: 119 ELLPAVYEIREKDVLYKKEDADKYGFIFNENSVPRVLKKAPSTHSPQLSVPSKTSTIDKT 178
Query: 536 RCRST 550
RST
Sbjct: 179 DTRST 183
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 534 LFQTVFVFDSTIADNVGVVVSSVTMIGPRLTVLISPC 424
L ++ + F T + S+++ +G LT+L+ PC
Sbjct: 211 LIKSDYYFCLTATVQYAIFFSTISRVGLALTILVFPC 247
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 350 KLLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP---IIVTELTTTPTLSAIVESKTK 520
KLL ++ S+ + Y KL++LF + ++ P II E T T + + ES K
Sbjct: 46 KLLTDHDQSASDYAYALKLQQLFDSENQATAPEKLPKDVIIPEEEYHTDTFNVVKESNDK 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,992
Number of Sequences: 5004
Number of extensions: 37925
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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