Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802...    31   0.93 
05_05_0026 + 21645845-21647404                                         30   2.1  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    29   4.9  
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    28   6.5  
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    28   6.5  
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309...    28   8.6  
01_06_0833 + 32296957-32297256,32299257-32299895                       28   8.6  

>11_02_0073 -
           8020401-8020512,8020594-8020679,8020761-8020921,
           8021196-8021400,8021664-8021697,8022352-8022422,
           8023363-8023542,8023625-8023765,8023859-8023975,
           8024074-8024469
          Length = 500

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 457
           + V+NLP +     +EK+KE+F KHGE+  V   P
Sbjct: 317 IYVKNLPENAS---KEKIKEIFEKHGEVTKVVLPP 348


>05_05_0026 + 21645845-21647404
          Length = 519

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 571 ALSVAVESRXRPPCWWGCPTRPARTTASSVRD 666
           AL +A++ R RPP W  CP   A  TAS  R+
Sbjct: 38  ALLLALQ-RLRPPWWCACPVCEAYVTASWARE 68


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 496 GYSRIKNKDSLEKALSEHGAVVEGHALSVAVESRXRPPCWWGCPTRP 636
           GY R  N  S    ++EH   V  ++  +A+ES     C W C   P
Sbjct: 736 GYERNLNGSSYPLCINEHVVYVSFYSHGIALESHFYCEC-WNCSLYP 781


>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQEKLKELFSKHGEINTV 445
           + V+ +P+S+  D+ + LKE+F KHG+I +V
Sbjct: 413 IFVDGIPTSW--DHAQ-LKEIFKKHGKIESV 440


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 97  QKKGRGVKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETT 231
           Q++GRG + R  +P P     ++Q+ ++ P R     +  S  TT
Sbjct: 42  QQQGRGCRARGASPPPPPQQQQQQQPRSTPTRATTVTVASSSSTT 86


>10_01_0298 -
           3094197-3094307,3095093-3095253,3095462-3095666,
           3096349-3096534,3096616-3096756,3096843-3096959,
           3097046-3097456
          Length = 443

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 457
           + V+NLP +     +EK+KE+F  HGE+  V   P
Sbjct: 289 IYVKNLPENAS---KEKIKEIFEIHGEVTKVVLPP 320


>01_06_0833 + 32296957-32297256,32299257-32299895
          Length = 312

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 350 KLLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTT 481
           K+ V  LP S     ++KLKE F+K GE+N      I+V +L T
Sbjct: 125 KIFVGGLPVSAT---EKKLKEYFNKFGEVNRA----IVVIDLNT 161


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,741
Number of Sequences: 37544
Number of extensions: 250504
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)