Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_49340| Best HMM Match : Homeobox (HMM E-Value=2.9e-21)              29   5.0  
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 28   6.7  
SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 127  QPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKA 249
            +P P P K+S+K+Q+  + PK   +  + +++ET + +  A
Sbjct: 2141 EPEPVPRKLSVKRQQHVSPPKEEQSEEVLVTIETRQEVESA 2181


>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 119 FTPRPFFWATMMTKYLDKKCQ 57
           FTP PFF  T++TK    KC+
Sbjct: 301 FTPNPFFTNTVLTKSYKMKCE 321


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 368 LPSSYLFDYQEKLKELFSKHGEINTVKRG 454
           +P S L+D + + +E++ + G +N  KRG
Sbjct: 246 IPGSVLYDAEMETREVWKRFGSLNFTKRG 274


>SB_49340| Best HMM Match : Homeobox (HMM E-Value=2.9e-21)
          Length = 193

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 689 WMCATSPQSRTEDAVVRA-GLVG 624
           WMCA S Q+RT D +  A GL+G
Sbjct: 161 WMCAPSSQTRTADELAAAIGLMG 183


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQE-KLKELFSKHGEINTVK 448
           L V NLP    FD +E +++ELFSKHG +  V+
Sbjct: 173 LFVSNLP----FDAKESEIEELFSKHGVVKQVR 201


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 409 GVVLKTRGNQYSQTWSNHCN*TDHNSDIIGYSRIKNKDSLEKALSEHGAVVEGHALSVAV 588
           G    T G+  + T  +  N   H +DI G++   N    E  ++ H A + GHA++   
Sbjct: 435 GHAANTAGHA-ANTAGHATNTAGHATDIAGHAT--NTGGHETVIARHAADIAGHAINTVG 491

Query: 589 ESRXRPP 609
           +S    P
Sbjct: 492 QSNKGTP 498


>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = +1

Query: 496 GYSRIKNKDSLEKALSEHGAVVEGHALSVAVESRXRP-PCWWGCPTRPARTTASSV 660
           GY+R + K   ++ +S+HG       L  +V S     P WW    R  R T   +
Sbjct: 604 GYARHRTKFMDDRCISDHGREARFPFLDESVVSFLNALPVWWKTDPRQPRGTGEKL 659


>SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 410 ELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVW 529
           E +SK G +N  K  P I  ++    TLS I+E+    V+
Sbjct: 103 ETYSKIGTLNATKLSPSINDKIKNVQTLSFILENSKPYVY 142


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = +1

Query: 490  IIGYSRIKNKDSLEKALSEHGAVVEGHALSVAVESRXRPPCWWGCPTRPARTTASSVRDC 669
            ++G  RI    SL   + E  A  EGH   V  +SR R   WW      A     S   C
Sbjct: 1629 VMGGDRIIIPGSLRSRVLE--AAHEGHQGIVKTKSRLRTKVWWPKMDSDAERVCKSCHGC 1686


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,258
Number of Sequences: 59808
Number of extensions: 285994
Number of successful extensions: 1097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)