Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL391834-11|CAM21148.1| 1673|Homo sapiens DENN/MADD domain conta...    31   5.5  
AL161909-3|CAH70581.2| 1673|Homo sapiens DENN/MADD domain contai...    31   5.5  
AK125842-1|BAC86313.1| 1557|Homo sapiens protein ( Homo sapiens ...    31   5.5  
AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein p...    30   7.3  
S42457-1|AAB22778.1|  686|Homo sapiens rod photoreceptor cGMP-ga...    30   9.6  
M84741-1|AAA52010.1|  690|Homo sapiens cGMP-gated cation channel...    30   9.6  
AC107068-3|AAY40919.1|  690|Homo sapiens unknown protein.              30   9.6  

>AL391834-11|CAM21148.1| 1673|Homo sapiens DENN/MADD domain
           containing 4C protein.
          Length = 1673

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 383 LFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKRRCRSTAPWW 562
           LFD  ++LK  FS+H   N++ + P ++ + T         E KT     +RC +  P W
Sbjct: 482 LFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQ-------EIKTAHKLAKRCYTNPPQW 534


>AL161909-3|CAH70581.2| 1673|Homo sapiens DENN/MADD domain
           containing 4C protein.
          Length = 1673

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 383 LFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKRRCRSTAPWW 562
           LFD  ++LK  FS+H   N++ + P ++ + T         E KT     +RC +  P W
Sbjct: 482 LFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQ-------EIKTAHKLAKRCYTNPPQW 534


>AK125842-1|BAC86313.1| 1557|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43854 fis, clone TESTI4007064. ).
          Length = 1557

 Score = 30.7 bits (66), Expect = 5.5
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 383 LFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKRRCRSTAPWW 562
           LFD  ++LK  FS+H   N++ + P ++ + T         E KT     +RC +  P W
Sbjct: 366 LFDRPQELKLCFSRHPTGNSITKSPPLMAKRTKQ-------EIKTAHKLAKRCYTNPPQW 418


>AJ549246-1|CAD70489.1|  105|Homo sapiens putative DYT3 protein
           protein.
          Length = 105

 Score = 30.3 bits (65), Expect = 7.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 601 RPPCWWGCPTRPARTTASSVRDC 669
           RPP  W CP RP R  A+S   C
Sbjct: 54  RPPRPWACPGRPCRRRAASPCSC 76


>S42457-1|AAB22778.1|  686|Homo sapiens rod photoreceptor cGMP-gated
           channel protein.
          Length = 686

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 233 SVVSMLNLIRYAIVLFGLFWNFCFFNDIFSGLGFG 129
           ++  + NL+ Y +++  + WN C F  I   +GFG
Sbjct: 292 NIFRISNLVMYIVII--IHWNACVFYSISKAIGFG 324


>M84741-1|AAA52010.1|  690|Homo sapiens cGMP-gated cation channel
           protein protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 233 SVVSMLNLIRYAIVLFGLFWNFCFFNDIFSGLGFG 129
           ++  + NL+ Y +++  + WN C F  I   +GFG
Sbjct: 296 NIFRISNLVMYIVII--IHWNACVFYSISKAIGFG 328


>AC107068-3|AAY40919.1|  690|Homo sapiens unknown protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 233 SVVSMLNLIRYAIVLFGLFWNFCFFNDIFSGLGFG 129
           ++  + NL+ Y +++  + WN C F  I   +GFG
Sbjct: 296 NIFRISNLVMYIVII--IHWNACVFYSISKAIGFG 328


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,360,153
Number of Sequences: 237096
Number of extensions: 1313256
Number of successful extensions: 3864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3864
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)