Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021344
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 2.5
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.5
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 2.5
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 5.9
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 5.9
Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49911-5|CAA90128.1| 431|Caenorhabditis elegans Hypothetical pr... 28 7.8
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 7.8
AF100675-1|AAC69003.2| 370|Caenorhabditis elegans Hypothetical ... 28 7.8
AF038613-12|AAB92046.3| 328|Caenorhabditis elegans Hypothetical... 28 7.8
>Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical
protein T14G10.7 protein.
Length = 544
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 564 LHHGAVLRQRLFQT---VFVFDSTIADNVGVVVSSVTMIGPR 448
L HGAVLR + +T V V D T D+ GV V+S + PR
Sbjct: 342 LQHGAVLRFVVLETVEPVIVLDDTGEDSHGVAVASWGAVLPR 383
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 686 MCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPSTTAPC 546
+C S R D + AG G PH +G + TE C +T A C
Sbjct: 1528 LCRESMGGRQCDRCL-AGFYGFPHCYGCSCNRAGTTEEICDATNAQC 1573
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 686 MCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPSTTAPC 546
+C S R D + AG G PH +G + TE C +T A C
Sbjct: 1528 LCRESMGGRQCDRCL-AGFYGFPHCYGCSCNRAGTTEEICDATNAQC 1573
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 686 MCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPSTTAPC 546
+C S R D + AG G PH +G + TE C +T A C
Sbjct: 1528 LCRESMGGRQCDRCL-AGFYGFPHCYGCSCNRAGTTEEICDATNAQC 1573
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 686 MCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPSTTAPC 546
+C S R D + AG G PH +G + TE C +T A C
Sbjct: 1528 LCRESMGGRQCDRCL-AGFYGFPHCYGCSCNRAGTTEEICDATNAQC 1573
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 719 KILYLVLLNSWMCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPS 561
++++L L +C P+S +E + VR+G+ P G +A CPS
Sbjct: 332 RVVFLQFLPKLVCMKRPKSASERSAVRSGMAQLPGV-GQFTLSPSAHHPLCPS 383
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 719 KILYLVLLNSWMCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPS 561
++++L L +C P+S +E + VR+G+ P G +A CPS
Sbjct: 332 RVVFLQFLPKLVCMKRPKSASERSAVRSGMAQLPGV-GQFTLSPSAHHPLCPS 383
>Z77131-3|CAB00855.1| 156|Caenorhabditis elegans Hypothetical
protein C54C6.4 protein.
Length = 156
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 4 FYCFSLASFCVNL*NSYYWHFLSKYFVIMVAQKKGRGVKLRQ 129
++CF FC L W LS YF+I+V + + ++LR+
Sbjct: 119 YFCF----FCFRLLQLSTWLLLSTYFIIIVKRGCSKKLELRR 156
>Z49911-5|CAA90128.1| 431|Caenorhabditis elegans Hypothetical
protein M28.6 protein.
Length = 431
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 472 TDHNSDIIGY--SRIKNKDSLEKALSEHGAVVEGHALSVAVESRXRPPCWWGCPTRPA 639
++H SD+ G+ R + + K E+G +EG A +V V+ + W G + A
Sbjct: 30 SNHKSDVSGFVDERFEKVREVFKKNFENGWEIEGSAFAVFVDGKKVVDLWGGYADKQA 87
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 719 KILYLVLLNSWMCATSPQSRTEDAVVRAGLVGHPHQHGGLXRDSTATESACPS 561
++++L L +C P+S +E VR+G+ P G +A CPS
Sbjct: 332 RVVFLQFLPKLVCMKRPKSASERTAVRSGMAQLPGV-GQFTLSPSAHHPLCPS 383
>AF100675-1|AAC69003.2| 370|Caenorhabditis elegans Hypothetical
protein Y55H10A.2 protein.
Length = 370
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 76 YFVIMVAQKKGRGVKLRQPNPSPLKM 153
YFVI++ KK +G L++ +P LKM
Sbjct: 190 YFVILLYLKKSQGGALKELSPQQLKM 215
>AF038613-12|AAB92046.3| 328|Caenorhabditis elegans Hypothetical
protein F42A6.1 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 76 YFVIMVAQKKGRGVKLRQPNPSPLKM 153
YFVI++ KK +G L++ +P LKM
Sbjct: 167 YFVILLYLKKSQGGALKELSPQQLKM 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,498
Number of Sequences: 27780
Number of extensions: 214743
Number of successful extensions: 818
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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