Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.9  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 613 WWGCPTRPARTTASS 657
           WW  P  PA+TT+ +
Sbjct: 45  WWSRPREPAQTTSKA 59


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +1

Query: 1   CFYCFSLASFCVNL*NSYYWHFLSKYFV 84
           CF  + +  FC+     Y +  L  Y V
Sbjct: 423 CFVSYLIGLFCITEGGMYVFQLLDSYAV 450


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +1

Query: 1   CFYCFSLASFCVNL*NSYYWHFLSKYFV 84
           CF  + +  FC+     Y +  L  Y V
Sbjct: 476 CFVSYLIGLFCITEGGMYVFQLLDSYAV 503


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 576 ERVPLHHGAVLRQRLFQTVFVFDSTIADNVGVVVSS 469
           E VPL    ++  +     F FD  I D +  ++S+
Sbjct: 868 ELVPLEGNLMINNKYALKFFPFDKHILDKLPTLISN 903


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 644 VRAGLVGHPHQH 609
           +R G V HPHQH
Sbjct: 13  LRNGGVEHPHQH 24


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 130 PNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRR 258
           P+P PL +++  ++    P R     I  SME   + L A +R
Sbjct: 447 PSPDPLDLAIPVRETLILPPRKRCKMILESMEIERNGLIASQR 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,916
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)