Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021344
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family pr...    31   0.58 
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ...    31   0.58 
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    29   2.4  
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    28   5.5  
At3g27130.1 68416.m03394 hypothetical protein                          28   7.2  
At1g05220.1 68414.m00527 expressed protein ; expression supporte...    28   7.2  
At3g15650.1 68416.m01984 phospholipase/carboxylesterase family p...    27   9.5  
At1g52700.1 68414.m05952 phospholipase/carboxylesterase family p...    27   9.5  
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin...    27   9.5  
At1g03905.1 68414.m00375 ABC transporter family protein similar ...    27   9.5  

>At5g54680.1 68418.m06809 basic helix-loop-helix (bHLH) family
           protein similar to unknown protein (pir |B71406)
          Length = 234

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +1

Query: 82  VIMVAQKKGRGVKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKAL 252
           V MV Q +G   KL+  N S L+  +K+ K +    R    R+K   E  E  LKA+
Sbjct: 116 VRMVTQLRGEAQKLKDSNSS-LQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAM 171


>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 451

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQEKLKELFSKHGEINTVK 448
           ++V+NLPS ++ +  E+L+++FS+ GEI  VK
Sbjct: 4   IIVKNLPSKHVTE--ERLRDVFSRKGEIADVK 33


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 353 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGP 457
           L V+N+P +      E+LKELF +HGE+  +   P
Sbjct: 294 LYVKNIPEN---TSTEQLKELFQRHGEVTKIVTPP 325


>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -2

Query: 254 LSAFSSDSVVSMLNLIRYAIVLFGLFWNFCFFNDIFSGLGFGCLSFTPRPFFWATMMTKY 75
           L  F++ S+      + Y  ++        F +  FS L     S  P PFFW  +M   
Sbjct: 277 LGQFTATSIRFAFCCVVYPCLVLQYMGQAAFLSKNFSALPSSFYSSIPDPFFWPVLMMAM 336

Query: 74  L 72
           L
Sbjct: 337 L 337


>At3g27130.1 68416.m03394 hypothetical protein
          Length = 366

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 70  SKYFVIMVAQKKGRGVKLRQPNPSPLKMSLKKQKFQNKPKRTMAY 204
           SKYF   V+Q  G+GVK  +      K+  K  K   + K T  Y
Sbjct: 170 SKYFGFHVSQSNGKGVKEMEERHDTDKLIPKAPKSMMQAKLTSLY 214


>At1g05220.1 68414.m00527 expressed protein ; expression supported
           by MPSS
          Length = 160

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 5   FIALVWRHFV*ICETVIIGIFYLNTSSSW 91
           F+ LVW   + +    I+ I+ + TS SW
Sbjct: 63  FVGLVWHEIIFLLPLSIVNIYAILTSKSW 91


>At3g15650.1 68416.m01984 phospholipase/carboxylesterase family
           protein low similarity to lysophospholipase I [Mus
           musculus] GI:1864159; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 255

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 547 HGAVVEGHALSVAVESRXRPPCWWGCPTRPAR 642
           HG    G + S  +ES   P   W CPT P+R
Sbjct: 40  HGLGDNGSSSSQLLESLPLPNIKWICPTAPSR 71


>At1g52700.1 68414.m05952 phospholipase/carboxylesterase family
           protein similar to lysophospholipase I [Mus musculus]
           GI:1864159; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 255

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 547 HGAVVEGHALSVAVESRXRPPCWWGCPTRPARTTAS 654
           HG    G + S  ++S   P   W CPT P+R   S
Sbjct: 40  HGLGDNGSSSSQLMDSLHLPNIKWICPTAPSRPVTS 75


>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 287

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 410 ELFSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKTVWKRRCRST 550
           E +SK  ++  +   P  V + TTT T +++VE KT  + K   R+T
Sbjct: 70  EKWSKK-KVELISPKPSEVKKTTTTTTTTSVVEKKTTEIKKDVIRTT 115


>At1g03905.1 68414.m00375 ABC transporter family protein similar to
           NBD-like protein GB:AAD20643
          Length = 290

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 416 FSKHGEINTVKRGPIIVTELTTTPTLSAIVESKTKT---VWKRRCRSTAPW 559
           + + GE+N + +   I  EL T+P L ++VES  ++   + K++ +  APW
Sbjct: 221 YIQDGELNRLSKMTDI-EELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPW 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,290
Number of Sequences: 28952
Number of extensions: 203279
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)