Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021342
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...   149   4e-37
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   2.0  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    27   3.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.4  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    26   4.5  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    26   4.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   6.0  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.9  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    25   7.9  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.9  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   7.9  

>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score =  149 bits (361), Expect = 4e-37
 Identities = 74/156 (47%), Positives = 100/156 (64%), Gaps = 4/156 (2%)
 Frame = +3

Query: 231 ENIRETEHGIICGSGMGSLAESIADGV-RIPYEDIPNFPISTVEGHHGQLVFGHI--EGV 401
           E + + +  IICGSG+G+LA  ++  V  +PYEDIP+F +S V GH  +L F  +  + V
Sbjct: 36  EELSKPKVAIICGSGLGTLASGLSAPVYEVPYEDIPHFHVSHVPGHASKLYFAFLGEKRV 95

Query: 402 SVVAMQGRFHYYEGYPLWKCCLPV-CDETVGSENFNRTNAAGGLNPNYKIGDLMIVRDHI 578
             + + GR+H YEGYP+     PV   + +G E    TNAAGGLN  +K+GDLMI++DHI
Sbjct: 96  PTMILAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLNQGFKVGDLMILKDHI 155

Query: 579 NMMGFAGNNPLHGPNDERFGPRFPPMNQAYNYEF*K 686
           N  G AG NPL GPN   FG RFPP++ AY+ E  K
Sbjct: 156 NFPGLAGMNPLRGPNAHEFGVRFPPLSDAYDLELRK 191


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 325 SYGILTPSAILSASEPIPEPQMMPCSVS 242
           S  +  P+A ++ +EP P+PQ +P + S
Sbjct: 210 STAVKAPTATVAENEPYPKPQSVPTTTS 237


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 145 PEIGSDCNGNEKTGYSYETLVETANFLLSRISEKPNMASFAALG 276
           PE  +    NE   Y Y T +  A F++  +   PN  +  A G
Sbjct: 116 PEYETANTNNES--YIYNTQISAAQFIIDMVKANPNEITIVAAG 157


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 369 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN 280
           H D  +C+  S+ +L  +V +PR LYFLL +
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLAS 218


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 172 NEKTGYSYETLVETANFLLSRISEKP 249
           NE+ G+S E LV T  +L  ++ E P
Sbjct: 68  NEEKGFSLEALVATCIYLSCKVEECP 93


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 584 HVDVISYNHQITNFVVRVKAACSVSPIKIF 495
           H+    Y H IT++    KAA +VS I  F
Sbjct: 29  HIAQFKYEHLITHWAQYTKAAIAVSTIAAF 58


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 528 LNPNYKIGDLMIVRDHINMMGF 593
           +NPNY  G  + V DH+ + G+
Sbjct: 189 VNPNYITGSSLAVYDHVRIDGY 210


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 361 PSTVLMGKFGISSYGILTPSAILSASEPIPEPQMMPCSVSLIFSTA-RNLRSPL 203
           PS +   KF  SS    TPS   +      EP++   SVS   S++ +NLRS L
Sbjct: 268 PSLLSSSKFFRSSPRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSL 321


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 479 ITHW*TTLPQWISFVVMKTALHSNDGHSFYVTENK 375
           +T W  +LP    F +  T  HS D H     E+K
Sbjct: 561 VTKWLLSLPPLQFFYIKDTIPHSKDNHKRQWLESK 595


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 137 FCVTKQFFSTISFAFIGAITTLSYPKIKAKNK*NDVQ 27
           FC+ +QF   I    I  + TL    I +KN+  ++Q
Sbjct: 293 FCLVRQFDPCIRLLSISCLVTLYKAGILSKNQTKEIQ 329


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 55  LIFG*LSVVMAPINANDIVEKNCLVTQKVLPEIGSDCNG 171
           +IFG  +++ A INAN+  ++  LV ++  P      NG
Sbjct: 42  IIFGVYAIIQARINANN--DETPLVYEEPAPPFSGQSNG 78


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 446 ISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYGK----VWNIF---VWYSYPVCYTFC 288
           I FV+   +L   + + F  ++   T MTL    G+    + N+F    W+  PVCY  C
Sbjct: 159 IGFVLFVASLKKGN-YKFQFSQFCWTHMTLLLVVGQSHFMINNLFEGLFWFFVPVCYVVC 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,944
Number of Sequences: 5004
Number of extensions: 68001
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)