Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021342
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    31   1.2  
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    29   2.7  
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254...    28   8.2  
07_03_0190 + 14893243-14893582,14893684-14893808                       28   8.2  

>11_04_0071 -
           13165019-13165082,13165345-13165428,13166325-13166524,
           13166756-13170655
          Length = 1415

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 402 TLLLCDRKQADHDDPPLCLWESLEYLRMVFLPRLLYFLLVNPSQSRK*CHVRFL 241
           TL+L  +  AD  +    +++ ++YLR++ LP L Y +    S   K  H+R+L
Sbjct: 595 TLMLFGKYDADFSETFSHIFKEVQYLRVLRLPTLTYSIDYLLSNFSKLIHLRYL 648


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 69  TKCGNGTYKRERYRG-EKLFGHAEGAAGNRI 158
           ++CG   Y R+  RG + LFGHA+G    RI
Sbjct: 139 SRCGGRDYWRQFMRGLDYLFGHADGYGERRI 169


>09_06_0111 -
           20924838-20924969,20925147-20925290,20925391-20925453,
           20925993-20926116,20926779-20927005,20927088-20927255,
           20927348-20927498,20927567-20927889
          Length = 443

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 307 PSAILSASEPIPEPQMMPCSVSLIFSTARNLRS 209
           PSA  +A+  +P P    C+  L  S AR LRS
Sbjct: 28  PSASPAAAASLPSPSRASCAPPLRASAARTLRS 60


>07_03_0190 + 14893243-14893582,14893684-14893808
          Length = 154

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 240 RETEHGIICGSGMGSLAE 293
           R+ + G ICGSG+G +AE
Sbjct: 134 RDVDDGKICGSGLGQIAE 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,320
Number of Sequences: 37544
Number of extensions: 442206
Number of successful extensions: 1063
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)