Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021342
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51199| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_14795| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_42242| Best HMM Match : NapE (HMM E-Value=3.7)                      28   6.3  
SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)                  28   8.4  
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)                       28   8.4  

>SB_51199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 23/49 (46%), Positives = 35/49 (71%)
 Frame = +3

Query: 486 VGSENFNRTNAAGGLNPNYKIGDLMIVRDHINMMGFAGNNPLHGPNDER 632
           +G ++   TNAAGGL  ++ +GD+M+++DHIN+ G  G +PL G ND R
Sbjct: 154 LGIKHLVVTNAAGGLRQDWNVGDIMVIKDHINLAGLTGLSPLRGCNDSR 202


>SB_14795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +3

Query: 255 GIICGSGMGSLAESIADGVRIPYEDIPNFPIST 353
           G+ICGSG+ SL + + +   IPYE IP FP ST
Sbjct: 29  GVICGSGLSSLGDLVTEKTVIPYEKIPQFPRST 61


>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 333  PNFPISTVEGHHGQLVFGHIEGVSVVAMQGRFHYYEGYPLW 455
            PN  IS VE  +G++VF +  G  +V ++  F+YY    +W
Sbjct: 1321 PNEFIS-VELVNGKIVFKYDTGAGLVRVESNFNYYSAGGVW 1360


>SB_42242| Best HMM Match : NapE (HMM E-Value=3.7)
          Length = 361

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
 Frame = +3

Query: 177 KNWIFL*NISGDRKFL-----AVENIRETEHGIICGSGMGSLAESIADGVRIPYED---- 329
           + W+      G R FL     AVEN  E +HGI    G+  +   + D  ++  ED    
Sbjct: 210 RRWLLQIGCKGSRNFLDAFRLAVENEEELKHGIEV-EGIYVITSGVPDEPKVDDEDGLIA 268

Query: 330 IPNFPISTVEGHHGQLVFGHIEGVSVVAMQGRFHYY 437
           IP       E  H      H       +++GRFH+Y
Sbjct: 269 IPGKFADREETAHTLKEMSH-------SVRGRFHWY 297


>SB_50521| Best HMM Match : MFS_1 (HMM E-Value=0.0026)
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 390 CDRKQADHDDPPLCLWESLEY 328
           C+R   +HDD P C+ +S E+
Sbjct: 394 CERDSTEHDDSPRCVRDSKEH 414


>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
          Length = 1313

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -2

Query: 172 FHYNQIRFPAAPSA*PNNFSPRYRSRL*-----VPLPHLVIQKLKRKINRTMFS 26
           + YN+++    P++ P+   P Y S +      VP PH  +QK+ R ++RT  S
Sbjct: 651 YGYNEVK----PASFPSEVIPEYHSSVRLYINPVPTPHGKVQKMLRLLHRTAVS 700


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,087,087
Number of Sequences: 59808
Number of extensions: 521516
Number of successful extensions: 1289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)