Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021342
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical ...   132   2e-31
Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    29   2.4  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    29   2.4  
AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical ...    29   4.2  
AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL023827-1|CAA19444.1|  209|Caenorhabditis elegans Hypothetical ...    28   5.6  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation ...    27   9.8  
AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.       27   9.8  

>AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical
           protein K02D7.1 protein.
          Length = 301

 Score =  132 bits (320), Expect = 2e-31
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
 Frame = +3

Query: 231 ENIRETEHGIICGSGMGSLAESIADGVRIPYEDIPNFPISTVEGHHGQLVFGHIEGVSVV 410
           E++   + GIICGSG+G + +++ D   +PY  IP FP + V GH G ++FG + G  VV
Sbjct: 38  EDVARADLGIICGSGLGPIGDTVQDATILPYSKIPGFPTTHVVGHKGNMIFGKLGGKKVV 97

Query: 411 AMQGRFHYYE-GYPLWKCCLPV-CDETVGSENFNRTNAAGGLNPNYKIGDLMIVRDHINM 584
            +QGRFH YE    L  C LPV     +G +    +NAAGG+N   + GDLM+++DHI +
Sbjct: 98  CLQGRFHPYEHNMDLALCTLPVRVMHQLGIKIMIVSNAAGGINAVLRHGDLMLIKDHIFL 157

Query: 585 MGFAGNNPLHGPNDERFGPRFPPMNQAYN 671
              AG +PL G ND RFG RF  ++ AY+
Sbjct: 158 PALAGFSPLVGCNDPRFGARFVSVHDAYD 186


>Z81536-3|CAB63200.1|  333|Caenorhabditis elegans Hypothetical
           protein F40D4.3 protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 182 VFSFPLQSDPISGSTFCVTKQFFSTISFAFIGAITTLSYP 63
           +F   L+S PIS ST  + +QFF  +S   I  I  +++P
Sbjct: 218 IFRHLLKSTPISRSTIRLQQQFFIAMSMQVILPIVIIAFP 257


>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 263 NDAMFGF-----SDILDSKKFAVSTNVS*EYPVFSFPLQSDPISGSTFCVT 126
           ND M GF      D   ++KF  ST     Y  ++FP   +PI  +TF VT
Sbjct: 115 NDKMRGFYRSQYKDKNGTEKFLASTQFESTYARYAFPCFDEPIYKATFDVT 165


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform b
           protein.
          Length = 948

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -1

Query: 263 NDAMFGF-----SDILDSKKFAVSTNVS*EYPVFSFPLQSDPISGSTFCVT 126
           ND M GF      D   ++KF  ST     Y  ++FP   +PI  +TF VT
Sbjct: 179 NDKMRGFYRSQYKDKNGTEKFLASTQFESTYARYAFPCFDEPIYKATFDVT 229


>AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical
           protein T06A4.3b protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 83  WHL*TRTISWRKIVWSRRRCCRKSDL 160
           W      +  RK +W R RCCR  DL
Sbjct: 245 WRKNRSKMQCRKDIWGRNRCCRGVDL 270


>AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical
           protein T06A4.3a protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 83  WHL*TRTISWRKIVWSRRRCCRKSDL 160
           W      +  RK +W R RCCR  DL
Sbjct: 245 WRKNRSKMQCRKDIWGRNRCCRGVDL 270


>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
           protein C04A11.3 protein.
          Length = 1228

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 401 HSFYVTENKLTMMTLHCAYGKVWNIFV 321
           +S Y  ENKLTM+   C  G V NI V
Sbjct: 97  YSTYFFENKLTMLLEFCGGGAVDNIIV 123


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/77 (19%), Positives = 36/77 (46%)
 Frame = -1

Query: 521 CSVSPIKIFTPNSFITHW*TTLPQWISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYG 342
           C + P+ +F  N+F  ++ T +   +++V   T           ++ N+L+++  +  + 
Sbjct: 72  CLMVPVYMFFDNNFPMNFFTAMSYHMAYVQYSTTA--------LISVNRLSVLWNYKTFE 123

Query: 341 KVWNIFVWYSYPVCYTF 291
            +W  F W+   V + F
Sbjct: 124 PIWRKFTWFIMFVVFAF 140


>AL023827-1|CAA19444.1|  209|Caenorhabditis elegans Hypothetical
           protein Y12A6A.1 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 632 PLVIGSMQRIVASKTHHVDVISYNHQITNFVVRVKAACSVSPIK 501
           P+ +  +Q I+A++ +H+   +Y   +TN +  V  A S++P K
Sbjct: 137 PINMAQLQAIIATEENHIKTGAYTTAVTNILKEV--AASMTPQK 178


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 483  TVGSENFNRTNAAGGLNPNY 542
            T+GSE  N  +++  LNPNY
Sbjct: 1578 TIGSEKKNNQSSSSALNPNY 1597


>L16621-14|AAA28224.3|  612|Caenorhabditis elegans Glycosylation
           related protein 3 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 176 SFPLQSDPISGSTFCVTKQFFSTI 105
           S P+Q+  I+G  F + KQFF  I
Sbjct: 337 SMPIQTPTIAGGLFAIDKQFFYDI 360


>AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical
           protein F54A5.1 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 361 PSTVLMGKFGISSYGILTPSAILSASEPIPEPQMMPCSV 245
           P T +     +S++ +  PSAI+SA+     P  +P ++
Sbjct: 334 PETAISPSPAVSTFEVSRPSAIISATSSTTSPISIPATI 372


>AF031833-1|AAC13669.1|  612|Caenorhabditis elegans GLY3 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 176 SFPLQSDPISGSTFCVTKQFFSTI 105
           S P+Q+  I+G  F + KQFF  I
Sbjct: 337 SMPIQTPTIAGGLFAIDKQFFYDI 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,188,354
Number of Sequences: 27780
Number of extensions: 384096
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)