Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021342
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52940.1 68418.m06569 hypothetical protein contains Pfam prof...    29   3.9  
At5g52930.1 68418.m06568 expressed protein contains Pfam profile...    29   3.9  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    29   3.9  
At5g55890.1 68418.m06967 hypothetical protein contains Pfam prof...    28   5.2  
At5g55880.1 68418.m06966 hypothetical protein contains Pfam prof...    28   5.2  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    28   6.8  

>At5g52940.1 68418.m06569 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 362

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 212 PQISCCREYQRNRTWHHLRL 271
           PQ+S CR  QRN  W ++R+
Sbjct: 158 PQLSLCRPAQRNSEWTNIRI 177


>At5g52930.1 68418.m06568 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295);
           expression supported by MPSS
          Length = 359

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 212 PQISCCREYQRNRTWHHLRL 271
           PQ+S CR  QRN  W ++R+
Sbjct: 155 PQLSLCRPAQRNSEWTNIRI 174


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 198 NISGDRKFLAVENIRETEHGIICGSGMGSLAESIADGVRIP 320
           N SG+R F   EN   +E   +CGS  G L+    +GV IP
Sbjct: 789 NYSGERCFPTNENEDSSEGDSLCGSS-GRLSNHHDEGVDIP 828


>At5g55890.1 68418.m06967 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 212 PQISCCREYQRNRTWHHLRL 271
           PQIS CR  QRN  W ++R+
Sbjct: 160 PQISFCRPAQRNSEWINVRI 179


>At5g55880.1 68418.m06966 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 212 PQISCCREYQRNRTWHHLRL 271
           PQIS CR  QRN  W ++R+
Sbjct: 160 PQISFCRPAQRNSEWINVRI 179


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
           eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = -2

Query: 349 LMGKFGISSYGILTPSAILSASEPIPEPQMMPCSVSLI-------FSTARNLRSPLMF 197
           L+ +FG+SSY  L P  I +  EP+   +M+   + ++        STA +LR  ++F
Sbjct: 819 LLSRFGLSSYLSLNPD-ITNEYEPVLVQEMLGLLIQILQERRFCGLSTAESLRREIIF 875


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,223,509
Number of Sequences: 28952
Number of extensions: 359767
Number of successful extensions: 985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)