Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021341
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    26   0.31 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.9  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -3

Query: 308 DTSPGRGAPRPCGSA*QNPPTPXRAKYLGDPNSQDSVGTA-ADAAMPPVCSIATGATV 138
           +TS   G P    S   +PP+P  +   G+    D+     +   +PP  S  T  T+
Sbjct: 116 ETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTL 173


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 479 CWTTRPPTLTYLRVPG 526
           CW   P  +TYL   G
Sbjct: 385 CWNATPEIITYLEKNG 400


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 508 LPSCTWRRLRRRNSSPTSPCRP 573
           LP+  W +++R    PT P  P
Sbjct: 194 LPTYKWMQVKRNVPKPTVPKIP 215


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 508 LPSCTWRRLRRRNSSPTSPCRP 573
           LP+  W +++R    PT P  P
Sbjct: 194 LPTYKWMQVKRNVPKPTVPKIP 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,392
Number of Sequences: 336
Number of extensions: 3040
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)