Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021341
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    67   2e-12
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    33   0.027
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    30   0.25 
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    30   0.34 
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   2.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   7.2  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    25   9.5  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.5  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   9.5  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   9.5  

>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
 Frame = +1

Query: 190 AVPTESCEFGSPKYFALXGVGGFCHA-LPHGRGAPRPG-EVSSXVDAEKYKNVVNGFK-- 357
           A P ++ +  +P+Y+ L  +GG       H    P    +    V+   Y   + GFK  
Sbjct: 9   APPKKTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVNPNIYPGNIAGFKTI 68

Query: 358 VSARGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYLPSCTWRRLR 537
           +S  G+RGL  G  PT IGYS+QG  K+GFYE+FK  Y+ ++  + A+ Y  S       
Sbjct: 69  LSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEYRTSIYLAASA 128

Query: 538 RRNSSPTSPCRPWRRAKVRIQT 603
                      P    KVR+QT
Sbjct: 129 SAELLADIMLCPMEAIKVRVQT 150


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 331 YKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYE-VFKVAYAGMLDD 489
           YK+V   F + AR  G+RGL +G    ++       C+ GFYE + +      LDD
Sbjct: 67  YKSVGQAFSLIARHEGIRGLQRGLGTAYVYQICLNGCRLGFYEPIRRTLNTWFLDD 122


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +1

Query: 256 FCHALPHGRGAPRPGEVSSXVDAEK-YKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQ 426
           F ++L + R        S+    E+ +  +V+ ++ + R  G+RGL +G+ P+ +G  + 
Sbjct: 149 FVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVY 208

Query: 427 GLCKFGFYEVFK-VAYAGMLDDETAYTYL 510
               FG Y+  K V   G L+     ++L
Sbjct: 209 RGLYFGMYDTLKPVVLVGPLEGNFLASFL 237


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 331 YKNVVNGFK--VSARGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKV 465
           Y N   GF   +   G+RG   G+AP+ +G S QG  +F  YE  K+
Sbjct: 133 YTNPFFGFYDLIKNEGLRGCYAGFAPSLLGVS-QGALQFMAYEKLKL 178


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +1

Query: 193 VPTESCEFGSPKYFALXGVGGFCHALPHGRGAPRPGEVSSXVDAEKYKNVVNGFKVSARG 372
           VP ++ + G+   F +    G  H LPH   A     V S  +A  +         ++R 
Sbjct: 316 VPYDNPDLGNVSPFIIAIKNGGIHVLPHITNAVILVSVLSVGNAAVF--------AASRN 367

Query: 373 VRGLAK-GWAPTFIG 414
              L K GWAP F+G
Sbjct: 368 AMALVKQGWAPRFLG 382


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 564 LSPMEAG*GPDPNHACFASNPS 629
           LSP   G    PN++ FA NPS
Sbjct: 496 LSPTSTGASNQPNYSPFADNPS 517


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 518 VPGGVCVGGIHRRHRPVAHGGGLRSGSKPC 607
           +PG +   G   R   + +GG +R+G  PC
Sbjct: 161 MPGCLIAMGRFNRPSIMVYGGSIRAGHSPC 190


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = +1

Query: 136 STVAPVAIEQTGGMAASAA-----VPTESCEF 216
           S V+PVA++Q      SAA     +P + CEF
Sbjct: 203 SNVSPVALQQARSFQGSAAPSRFLLPIQQCEF 234


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 367  RGVRGLAKGWAPTFIGYSMQGLCKFGF 447
            R V G +  W P      + G+CK GF
Sbjct: 1114 RSVHGWSCQWGPREDSMLLSGICKHGF 1140


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 23/89 (25%), Positives = 34/89 (38%)
 Frame = +1

Query: 151 VAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCHALPHGRGAPRPGEVSSXVDAEK 330
           V I + GG A  AA+ +  C      + +  G GGF   + H  G            A  
Sbjct: 114 VGILKAGGNAVDAAIASGICIGAVNSFSSGIGGGGFM-LIRHPNGTAHSLNFRETAPAGA 172

Query: 331 YKNVVNGFKVSARGVRGLAKGWAPTFIGY 417
            KN+ +G    ++ V GL+        GY
Sbjct: 173 SKNMFHGNSTLSQ-VGGLSVAVPGEIAGY 200


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = +3

Query: 51  LKHNNVLFVARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 209
           +K NN       GA+LS      A P         Y  D W+  V   T+G L
Sbjct: 388 VKDNNTSLEVEYGADLSTLDQGSAFPSLAKNPVNPYSKDTWNLNVIASTNGSL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,039
Number of Sequences: 5004
Number of extensions: 48919
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)