Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021341
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0867 - 32338313-32338331,32338372-32338496,32338972-323391... 93 2e-19
06_01_0755 + 5648872-5649471,5650092-5650453,5650576-5650619,565... 91 7e-19
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279... 82 4e-16
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 80 1e-15
03_02_0454 + 8626832-8627134,8627255-8627606,8627705-8627748,862... 73 3e-13
09_06_0221 - 21649030-21649290,21649553-21649610,21649943-216502... 69 3e-12
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272... 33 0.26
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 32 0.35
10_08_1015 - 22255135-22255693,22256437-22256836,22257938-222583... 32 0.46
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 31 0.80
08_02_1279 - 25841767-25842017,25842181-25842418,25842685-258430... 31 1.1
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 30 1.4
05_04_0204 - 19022329-19023990 30 1.9
07_03_0526 - 19046900-19047083,19049061-19049464 29 3.2
03_05_0431 + 24221881-24224586 29 3.2
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 29 3.2
09_04_0112 - 14757947-14758972 29 4.3
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 29 4.3
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 5.6
08_02_0828 - 21596570-21597337 28 5.6
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 28 5.6
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 28 7.5
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 28 7.5
09_04_0430 + 17502387-17503505 27 9.9
09_02_0237 + 6141048-6141962 27 9.9
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 27 9.9
05_06_0282 + 26915249-26915881 27 9.9
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 27 9.9
01_05_0323 - 20934429-20934447,20934658-20934774,20934815-209349... 27 9.9
>02_05_0867 -
32338313-32338331,32338372-32338496,32338972-32339186,
32340043-32340086,32340187-32340548,32341357-32341650
Length = 352
Score = 92.7 bits (220), Expect = 2e-19
Identities = 61/173 (35%), Positives = 79/173 (45%), Gaps = 4/173 (2%)
Frame = +1
Query: 103 FRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCHA-LPHG 279
F P+SPA + AP A+ GG S P E E SP ++A GG L H
Sbjct: 32 FPSPVSPA----SPAPGAVG--GGAPISIQAPREKIEMYSPAFYAACTAGGIASCGLTHM 85
Query: 280 RGAPRP-GEVSSXVDAEKYKNVVNGFKV--SARGVRGLAKGWAPTFIGYSMQGLCKFGFY 450
P + + +D KYK++ +GF V +G RG +GW PT +GYS QG CKFGFY
Sbjct: 86 AVTPLDLVKCNMQIDPAKYKSITSGFGVLLKEQGPRGFFRGWVPTLLGYSAQGACKFGFY 145
Query: 451 EVFKVAYAGMLDDETAYTYLPSCTWRRLRRRNSSPTSPCRPWRRAKVRIQTMP 609
E FK Y+ + E A Y P+ KVR+QT P
Sbjct: 146 EFFKKYYSDIAGPEYAQKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQP 198
>06_01_0755 +
5648872-5649471,5650092-5650453,5650576-5650619,
5651324-5651538,5651643-5651767,5651862-5651931
Length = 471
Score = 91.1 bits (216), Expect = 7e-19
Identities = 53/151 (35%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +1
Query: 169 GGMAASAAVPTESCEFGSPKYFALXGVGGFCHA-LPHGRGAPRP-GEVSSXVDAEKYKNV 342
GG P E E SP ++A GG L H P + + +D KYK++
Sbjct: 150 GGAPIEIQAPREKIEMYSPAFYAACTAGGIASCGLTHMAVTPLDLVKCNMQIDPAKYKSI 209
Query: 343 VNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYLPS 516
+GF + A+ GVRG +GW PT +GYS QG CKFGFYE FK Y+ + E A Y
Sbjct: 210 TSGFGILAKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAQKYKTL 269
Query: 517 CTWRRLRRRNSSPTSPCRPWRRAKVRIQTMP 609
P+ KVR+QT P
Sbjct: 270 IYLAGSASAEVIADVALCPFEAVKVRVQTQP 300
>09_04_0372 +
17026551-17026778,17027469-17027830,17027925-17027968,
17028079-17028293,17028405-17028529,17028617-17028692
Length = 349
Score = 81.8 bits (193), Expect = 4e-16
Identities = 55/155 (35%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Frame = +1
Query: 169 GGMAASAAVPTES----CEFGSPKYFALXGVGGFCHA-LPHGRGAPRPG-EVSSXVDAEK 330
G A A P+E E SP Y++ GG L H P + + +D K
Sbjct: 22 GAPAVVAGAPSEPPFGMIELFSPAYYSACAFGGAAACGLTHAAVTPLDVIKCNIQIDPTK 81
Query: 331 YKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYT 504
YK+ + F V R G RG +GWAPTF+GYS QG K+G YEVFK YA M E A
Sbjct: 82 YKSTTSAFGVVMREQGARGFYRGWAPTFLGYSAQGAFKYGLYEVFKKEYADMAGPEYAAR 141
Query: 505 YLPSCTWRRLRRRNSSPTSPCRPWRRAKVRIQTMP 609
Y + P KVR+QT P
Sbjct: 142 YKTLIYLAGSATAEVAADVALCPMEAVKVRVQTQP 176
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 80.2 bits (189), Expect = 1e-15
Identities = 50/145 (34%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Frame = +1
Query: 85 AARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCH 264
AA +SP + + AP ++ A S P E SP ++A GG
Sbjct: 22 AASSSPSFAAAAAVGVRGVPAP-SLAGPAVWARSPREPAGKIEMYSPAFYAACTAGGIAS 80
Query: 265 A-LPHGRGAPRP-GEVSSXVDAEKYKNVVNGFKV--SARGVRGLAKGWAPTFIGYSMQGL 432
L H P + + +D KYK++ +GF V +G RG +GW PT +GYS QG
Sbjct: 81 CGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGARGFFRGWVPTLLGYSAQGA 140
Query: 433 CKFGFYEVFKVAYAGMLDDETAYTY 507
CKFGFYE FK Y+ + E A Y
Sbjct: 141 CKFGFYEFFKKYYSDIAGPEYAAKY 165
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +3
Query: 510 TFVYLAASASAEFIADIALSPMEA 581
T +YLA SASAE IADIAL PMEA
Sbjct: 167 TLIYLAGSASAEVIADIALCPMEA 190
>03_02_0454 +
8626832-8627134,8627255-8627606,8627705-8627748,
8629014-8629035,8629136-8629350,8629468-8629592,
8629681-8629756
Length = 378
Score = 72.5 bits (170), Expect = 3e-13
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Frame = +1
Query: 172 GMAASAAVPTESCEFGSPKYFALXGVGGFCHA-LPHGRGAPRP-GEVSSXVDAEKYKNVV 345
G+ + + + +P ++A +GG L H P + + VD KY+++
Sbjct: 52 GLEEGRKADSAAMQLHTPLFYATCALGGLLSTGLTHLAVTPLDLVKCNMQVDPGKYRDIS 111
Query: 346 NGFKV--SARGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYLPSC 519
+GF V +G+ G KGW T +GYS QG CKFGFYE FK Y+ + E A +
Sbjct: 112 SGFGVLLQEQGLGGFFKGWMATLVGYSSQGACKFGFYEFFKKCYSDIAGPEHAEKWKTFI 171
Query: 520 TWRRLRRRNSSPTSPCRPWRRAKVRIQTMP 609
P KVR+QT P
Sbjct: 172 YLAASASAEMIADVALCPMEAVKVRVQTQP 201
>09_06_0221 -
21649030-21649290,21649553-21649610,21649943-21650292,
21650605-21650799
Length = 287
Score = 68.9 bits (161), Expect = 3e-12
Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Frame = +1
Query: 220 SPKYFALXGVGGFCHA-LPHGRGAPRPG-EVSSXVDAEKYKNVVNGFKVSAR--GVRGLA 387
SP+Y+AL GG A H P +V+ V+ KY ++ +G + + G L
Sbjct: 32 SPEYYALCTGGGMLAAGATHLAITPLDVLKVNMQVNPMKYNSIFSGLNILVKEEGASSLW 91
Query: 388 KGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYT-YLPSCTWRRLRRRNSSPTSP 564
+GWA F GY QG CKFG YE FK Y+ +L D T Y S ++ + +
Sbjct: 92 RGWAGKFFGYGFQGGCKFGLYEYFKKKYSDVLVDRNKSTIYFISSASAQI----IADVAL 147
Query: 565 CRPWRRAKVRIQTMPVSRATLRXGVGR 645
C P+ KVR+QT P+ L G R
Sbjct: 148 C-PFESVKVRVQTQPMFAKGLIDGFPR 173
>09_04_0608 +
18924648-18924899,18926341-18926435,18926903-18927236,
18927345-18927582,18927813-18928069
Length = 391
Score = 32.7 bits (71), Expect = 0.26
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 316 VDAEKYKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDD 489
++ E Y ++ F R G+RGL G PT IG C + Y+ K +Y L
Sbjct: 232 INREVYPSISVTFSKIYRTDGIRGLYAGLCPTLIGMLPYSTCYYFMYDTIKTSYC-RLHK 290
Query: 490 ETAYT 504
+T+ T
Sbjct: 291 KTSLT 295
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 331 YKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 462
YK +++ K R G+RGL +G AP+ G KF FYE K
Sbjct: 186 YKGILDCVKTIYRQNGLRGLYRGMAPSLYGIFPYSGLKFYFYETMK 231
>10_08_1015 -
22255135-22255693,22256437-22256836,22257938-22258371,
22259586-22259977
Length = 594
Score = 31.9 bits (69), Expect = 0.46
Identities = 45/151 (29%), Positives = 55/151 (36%), Gaps = 8/151 (5%)
Frame = +1
Query: 58 IIMFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTG-GMAAS-AAVPTE--SCEFGSP 225
+ F++LL R S TV+ + G G+A S A PTE C +
Sbjct: 354 VAAFNALLFTVRGQMEAVLRSEPGAPLTVSQQVVAGAGAGVAVSFLACPTELIKCRLQAQ 413
Query: 226 KYFALXG-VGGFCHALPHGRGAPRPGEVSSXVDAEKYKNVVNGFKVSAR---GVRGLAKG 393
A A P G GA ++ V A KY V+ K R GV GL KG
Sbjct: 414 SALASAAPAAAAAAASPVGGGA---ATATASVAAVKYGGPVDVAKQVLRSEGGVGGLFKG 470
Query: 394 WAPTFIGYSMQGLCKFGFYEVFKVAYAGMLD 486
PT FG YE K AG D
Sbjct: 471 LGPTLAREVPGNALMFGVYEAIKQYLAGGQD 501
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 239 RAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFRAASS 78
R G P ++ + GTAA PPV +IAT + W A G G AA +
Sbjct: 388 RLSQRGSPKAETTAGTAA---APPVAAIATSPAIGW-VAPQPGAHPGRLLAAGA 437
>08_02_1279 -
25841767-25842017,25842181-25842418,25842685-25843018,
25843498-25843592,25845461-25845700
Length = 385
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 316 VDAEKYKNVVNGFK--VSARGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAY 471
V+ E Y ++ F G+ GL G PT +G C + YE K +Y
Sbjct: 228 VNREAYPSIGLAFNKIYQTDGIGGLYAGLCPTLVGMLPYSTCYYFMYETIKTSY 281
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = -3
Query: 416 YPMKVGAHPLARPRTPRADTLKPFTTFLYFSASTXDDTSPGRGAPRPCGSA*Q 258
YP +G H +RPR PR+ P TT +A+ D SP AP S Q
Sbjct: 103 YPSFLGPHA-SRPRPPRSQQQTPTTT----AAAAADSRSPTPAAPPQTASVSQ 150
>05_04_0204 - 19022329-19023990
Length = 553
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 385 AKGWAPTFIGYS--MQGLCKFG 444
AKGW P I YS M GLCK G
Sbjct: 271 AKGWTPDVITYSSYMDGLCKAG 292
>07_03_0526 - 19046900-19047083,19049061-19049464
Length = 195
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/72 (34%), Positives = 30/72 (41%)
Frame = +1
Query: 85 AARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCH 264
AA SP P S++APVA GG ++SAAV + S A G
Sbjct: 15 AALPSPMEEDKKPRLVASSLAPVAGGGGGGSSSSAAVAAGASSSSSSSSVAAAARRGAGR 74
Query: 265 ALPHGRGAPRPG 300
A G GAP G
Sbjct: 75 A---GGGAPSGG 83
>03_05_0431 + 24221881-24224586
Length = 901
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 473 PVCWTTRPPTLTYLRVPGGVCVG-GIHRRHRPVAHGGGLRSGSKPC 607
P+CW P + V G+CV + A+ G + SGSK C
Sbjct: 311 PMCWGHSGPLALPMAVSPGICVSDSCSHGYYEYANHGEVGSGSKTC 356
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +1
Query: 115 LSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCHALPHG 279
+ PAQ S ++P QT G A P E + K+ + G C HG
Sbjct: 759 MHPAQIDSWISPQQTSQTQGPALRLECPREGQVISNIKFASFGTPSGTCGNYNHG 813
>09_04_0112 - 14757947-14758972
Length = 341
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 651 PSSPNAXAKGCSRNRHGLDPDLSPPP 574
P+S A GC RN H P+ SPPP
Sbjct: 74 PTSLRCAACGCHRNFHRRLPEGSPPP 99
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 470 TPVCWT-TRPPTLTYLRVPGGVCVGGIH-RRHRPVAHGGGLRSGSKP 604
+P W+ +RPP + +P G+ RR RP GGG +G KP
Sbjct: 380 SPSRWSFSRPPRRSRRALPAIPSPAGLRPRRRRPRRPGGGELTGEKP 426
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 509 YLRVPGGVCVGGIHRRHRPVAHGGGLRSG 595
Y GG GG H H+ HGGG+ G
Sbjct: 161 YTSSHGGGGGGGHHLHHQSYVHGGGMEGG 189
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 443 PNLQRPC-IEYPMKVGAHPLARPRTPRADTLKPFTTFLYFSASTXDDTSPGRGAPRPC 273
P L PC I P A P++ P+ RAD ++ + S +S G+ PC
Sbjct: 32 PLLPTPCLIILPASFRAPPVSDPKPGRADAVERWDARKKAGGSAASSSSSSSGSAIPC 89
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 358 VSARGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 462
+ RG RGL G PT + +FG Y+ FK
Sbjct: 181 MKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFK 215
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 304 VSSXVDAEKYKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 462
+ S ++ +++ +K + + G+RGL +G++ + +G ++ FG Y+ K
Sbjct: 162 IESQGSKRQFSGLLDVYKKTLKTDGIRGLYRGFSVSIVGITLYRGLYFGIYDTMK 216
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +1
Query: 70 SSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGG--MAASAAVPTES 207
SS +R PFR + S APV +E GG A AA P S
Sbjct: 39 SSRCSFSRGGPFRVHCAVTATTSAAAPVVVEAPGGGMRLAYAAAPDSS 86
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -3
Query: 302 SPGRGAPRPCGSA*QNPPTPXRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDW 132
+P R AP P TP RA P + + A AA PP+ +A + W
Sbjct: 175 TPPRAAPLPTPPRAPPQSTPPRAAPQSTPPQRVAPQPPATAAAPPIEPVAPPSPTFW 231
>09_02_0237 + 6141048-6141962
Length = 304
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 171 WHGGVCCGTHGVL 209
WHGGV CG +G L
Sbjct: 252 WHGGVSCGEYGEL 264
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 GAPRPGEVSSXVDAEKYKNVVNGFKVSARGVRGLAKGWAP-TFIGYSMQGLCK 438
GAPR G S + E+ + V GF S +G W+P + Y+ +GL +
Sbjct: 706 GAPRKGSTSEALSQEEKLSGVGGFSPS----KGSRFSWSPDSGEAYTQEGLAR 754
>05_06_0282 + 26915249-26915881
Length = 210
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +1
Query: 58 IIMFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFA 237
+++ + LL+A R + P+ V A+E GG + +A P G A
Sbjct: 19 VVLLAPLLEARRLHVLPPLMLPSD--GVVVGGAVEVEGGRSGNA--PPSPRPHGRVTPLA 74
Query: 238 LXGVGGFCHALPHGRGAPRPG 300
G GG P GRG P PG
Sbjct: 75 DGGGGGVLRR-PPGRGPPPPG 94
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 106 RGPLSPAQCQS---TVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALXGVGGFCHALPH 276
RG S C T A VA+ Q AA+AA+P S G + + G GG A P
Sbjct: 51 RGASSKVYCARDARTGAHVAVRQGHPKAAAAALPPMSLARGGRRGAEVRGAGG-RRAPPR 109
Query: 277 GRGAPRPG 300
R R G
Sbjct: 110 ARPPARGG 117
>01_05_0323 -
20934429-20934447,20934658-20934774,20934815-20934964,
20935578-20935828,20936403-20936449,20936852-20936976,
20937039-20937154,20937194-20937284,20937772-20937893,
20938667-20938894,20938990-20939221,20941598-20941797
Length = 565
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 10 GAVCSWLVNSIKLN*NIIMFSSLLDAARNSPFRGPLSPA 126
G +C WLV+ + L+ ++ + + + P P+SPA
Sbjct: 226 GCMCKWLVSYLLLSVDVWLMMRSEERRQAEPHPNPISPA 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,705,743
Number of Sequences: 37544
Number of extensions: 451160
Number of successful extensions: 1653
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -