Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021341
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)            154   5e-38
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.62 
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   31   0.62 
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)             31   1.1  
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_6970| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=8.8)            28   5.8  
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_4221| Best HMM Match : Pam16 (HMM E-Value=2.3)                      28   7.6  

>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
          Length = 205

 Score =  154 bits (374), Expect = 5e-38
 Identities = 91/196 (46%), Positives = 109/196 (55%), Gaps = 4/196 (2%)
 Frame = +1

Query: 64  MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFALX 243
           MFS   + A+NS    PLS A+C S V   +   +  + ASAA    SCEFGS KY+AL 
Sbjct: 1   MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYALC 58

Query: 244 GVGGFCHA-LPHGRGAPRP-GEVSSXVDAEKYKNVVNGFKVSAR--GVRGLAKGWAPTFI 411
           G GG     L H    P    +    VD +KY ++VNGFK++ +  GVRGLA+GWAPTFI
Sbjct: 59  GFGGILSCGLTHTAVVPLDLVKCRIQVDPKKYGSMVNGFKITLKEDGVRGLARGWAPTFI 118

Query: 412 GYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYLPSCTWRRLRRRNSSPTSPCRPWRRAKV 591
           GYSMQGL KFGFYEVFK+ Y  ML +E +Y Y  S                  P    KV
Sbjct: 119 GYSMQGLGKFGFYEVFKIMYGNMLGEEYSYLYRTSLYLAASASAEFFADIALAPMEAVKV 178

Query: 592 RIQTMPVSRATLRXGV 639
           RIQT P    TLR GV
Sbjct: 179 RIQTQPGWAGTLREGV 194


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 251 PTPXRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSG 111
           P P RA  L  P  + S G+ A+ A PP   +ATG +  +     SG
Sbjct: 816 PPPGRASQL--PLQEQSSGSRAEEASPPPALVATGPSASYRLPNASG 860


>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 30/125 (24%), Positives = 44/125 (35%)
 Frame = -3

Query: 377  RTPRADTLKPFTTFLYFSASTXDDTSPGRGAPRPCGSA*QNPPTPXRAKYLGDPNSQDSV 198
            R PR D L+  T  +Y  A         R  PR      + P    R +    P    S+
Sbjct: 716  RIPREDVLRVCTDAIYAKAVPSGVKLVERN-PRYGEWRHKKPGYEWRPEAAWGPKKSGSL 774

Query: 197  GTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFRAASSNEENIIMF*FSLMLFTSHEH 18
                  A    C +   A+   + AG  GP   E+  +     NI++      L  +H+H
Sbjct: 775  AREPSTAPSLFCDLVAAASAKMYLAGQGGPGKTEWAVSMFRGRNIVVLTPENDL--AHDH 832

Query: 17   TAPPR 3
               PR
Sbjct: 833  RNNPR 837


>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
          Length = 95

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +1

Query: 325 EKYKNVVNGFKVSAR--GVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLD 486
           +KY  ++N F    R  G+R   +G+ PT IG        F  YE  K A+    D
Sbjct: 23  KKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYETCKKAFGEFYD 78


>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -3

Query: 218 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 57
           P  Q    T   A  PPV    +G+  D  W GD S P+  + R+      N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452


>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 132 PVDGRARGYRADRWHGGVCCG 194
           P +G+ RG+R     GGVCCG
Sbjct: 91  PREGQIRGFRFVHISGGVCCG 111


>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 CQSTVAPVAIEQTGGMAASAAVPTES 207
           C ST  PV  +QT   A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179


>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 382 LAKGWAPTFIGYSMQGLCKFGFYEVFKV 465
           L KGW  T   ++M G  K+G  E+ K+
Sbjct: 123 LLKGWGATSFEHAMIGAAKYGHIEIVKL 150


>SB_6970| Best HMM Match : Chlorovi_GP_rpt (HMM E-Value=8.8)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +1

Query: 244 GVGGFCHALPHGRGAPRPGEVSS-XVDAEKYKNVVNGFKVSARGVRGLAKGWAPTFIGYS 420
           G+ G   + P  R A  PG VSS            N   V+  G R L      TF G +
Sbjct: 44  GIRGVVSSSPTPRSADAPGNVSSMSTSTSPMMRHANNTVVNNVG-RNLVSRLKITFAGET 102

Query: 421 MQGLCKFGFYEVFKVAYAGMLDDETAYTY-LPSCTWRRLRRR 543
           +Q   ++  ++ ++  Y   ++ E      + S   R+LR +
Sbjct: 103 LQDTDRYDAFKTYEELYLSKVEREDRLEQGIQSENMRKLRSK 144


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = +1

Query: 244  GVGGFCHALPHGRGAPRPGEVSS-XVDAEKYKNVVNGFKVSARGVRGLAKGWAPTFIGYS 420
            G+ G   + P  R A  PG+VSS            N   V+  G R L      TF G +
Sbjct: 701  GMRGVVSSSPAPRSADAPGKVSSMSTSTSTMMRHANNTVVNNVG-RNLVSRLKITFAGET 759

Query: 421  MQGLCKFGFYEVFKVAYAGMLDDETAYTY-LPSCTWRRLRRR 543
            +Q   ++  ++ ++  Y   ++ E      + S   R+LR +
Sbjct: 760  LQDTNRYDVFKTYEELYLSKVEREDRLKQGIQSENMRKLRSK 801


>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 75  VARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 209
           + RCG   +  W    +P P++GR R      W G  C     +L
Sbjct: 338 IRRCGTH-APGWMVGRQPSPIEGRVRRTVCFNWAGNCCKWRQNIL 381


>SB_4221| Best HMM Match : Pam16 (HMM E-Value=2.3)
          Length = 218

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = +1

Query: 244 GVGGFCHALPHGRGAPRPGEVSS-XVDAEKYKNVVNGFKVSARGVRGLAKGWAPTFIGYS 420
           G+ G   + P  R A  PG+VSS            N   V+  G R L      TF G +
Sbjct: 22  GIRGVVSSSPAPRSADAPGKVSSMSTSTSPMMRQANNTVVNNVG-RSLVSRLKITFAGET 80

Query: 421 MQGLCKFGFYEVFKVAY-AGMLDDETAYTYLPSCTWRRLRRR 543
           +Q   ++  ++ ++  Y + ++ ++     + S   R+LR +
Sbjct: 81  LQDTNRYDVFKTYEELYLSKVVREDRLEQGIQSENMRKLRSK 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,004,366
Number of Sequences: 59808
Number of extensions: 433200
Number of successful extensions: 1461
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)