Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021341
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = -3

Query: 317 TXDDTSPGRGAPRPCGSA*QNPPTPXRAKYLGDPNSQDSVGTAADAAMPP 168
           T     P  GAP P  S  Q+P  P R      PN             PP
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRG---SPPNPSQGPPPGGPPGAPP 56


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 544 NSSPTSPCRPWRRAKVRIQTMPVSRATLR 630
           +S+PTS C   R     ++ MPV +  L+
Sbjct: 598 SSAPTSVCSSPRSEDKEVEDMPVLKRVLQ 626


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 530 VCVGGIHRRHRPVAHGGG 583
           VC+    RRHRPV    G
Sbjct: 105 VCMRKCPRRHRPVCASNG 122


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 113 GPRNGEFRAASSNEEN 66
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,439
Number of Sequences: 438
Number of extensions: 3932
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)