Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021340
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    35   0.010
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    35   0.013
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    28   1.5  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   4.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.0  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   8.0  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 534 NVKGIPDFWYNIFRNVSMLSEMMQEHDE 617
           + KGIP+FW    +NV  LSEM+   DE
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDE 187



 Score = 33.5 bits (73), Expect = 0.030
 Identities = 36/148 (24%), Positives = 55/148 (37%)
 Frame = +2

Query: 260 LRTLQKXFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 439
           LR LQK + D+E++F  E+                 R+ +V G  EP ++E         
Sbjct: 82  LRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEE--------I 133

Query: 440 EEEELARAVQNAAITEGEEKKDDRLSSLHGSQCKGYPRLLVQHIQECLNAQRNDART**T 619
           ++ E A   +    T  E KK +      G   KG P   +  ++  L+           
Sbjct: 134 KKGEAADENEKKEPTSSESKKQE-----GGDDTKGIPEFWLTAMKNVLSLSEMITPEDEG 188

Query: 620 ILKCLXDIKVPMHEDPISFTFGIYFAPN 703
            L  L DI++   E P  F     FA N
Sbjct: 189 ALSHLVDIRISYMEKP-GFKLEFEFAEN 215


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 531 PNVKGIPDFWYNIFRNVSMLSEMMQEHDE 617
           P+ KGIP+FW     NV ++ EM+   DE
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDE 189


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -1

Query: 577 FLNMLYQKSGIPFTLGSME 521
           +LN+L +KSG+PF+LG ++
Sbjct: 299 YLNILVKKSGMPFSLGVVQ 317


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 73  ERSTVPIFNISLSPPSKFSEKKDG 2
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 147  HLLKSGVTRNEMIAAITNRLHAEAMASLP 233
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 416 LNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSLHGSQCKGYPRLL 559
           +N W  DT ++     V         E   D L +L   QC+G P L+
Sbjct: 63  VNSWEKDTNKDA---TVSYELSNNANEGSLDLLGALQYGQCQGIPELV 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,660
Number of Sequences: 5004
Number of extensions: 53395
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)