Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021340
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 31 0.91
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 29 4.9
SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_34632| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25) 29 4.9
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 28 6.4
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 8.5
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 8.5
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 48.0 bits (109), Expect = 7e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 534 NVKGIPDFWYNIFRNVSMLSEMMQEHDEP 620
+ KGIP+FW +NV +LSEM+QEHDEP
Sbjct: 236 DTKGIPEFWLTAMKNVELLSEMIQEHDEP 264
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/66 (34%), Positives = 29/66 (43%)
Frame = +2
Query: 290 IEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQ 469
+E KFY EVHA R I +G EP D+EC W D E+E+ A +
Sbjct: 145 LEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEAEEKE 202
Query: 470 NAAITE 487
TE
Sbjct: 203 EKEATE 208
>SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKKD-DRLSSLHG 529
W+++ EE+E R + TEGEE++ +RLS L G
Sbjct: 103 WKEEEEEDEAERESMDNTNTEGEEEEGMERLSDLPG 138
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +2
Query: 389 TYEPNDDECLNPWRDDTEEEEL-----ARAVQNAAITEGEEKKDDRLSSLHGSQCKGYPR 553
TYE D+ C +PW+D +++ E+ R + + G D+ + L +G +
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEVQTLDFTRTFEEYGVGIGTPGDDNFMLGLDNINSQGAKK 327
Query: 554 LLVQ 565
LLV+
Sbjct: 328 LLVR 331
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 231 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 133
V +PS +HE D PL F +GS + T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKKD-DRLSSLHG 529
W+++ +E+E R + TEGEE++ +RLS L G
Sbjct: 37 WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDLPG 72
>SB_34632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 332 CIRVHVLHCKTWPQCRQTPSEEFSRRDSPTNIRG*GCHRFCMK 204
C R HVLHC+++ R SE + RDS R C R+ ++
Sbjct: 103 CERYHVLHCESY---RVRDSERYRVRDS-ERYRDCDCERYLVR 141
>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
Length = 401
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKKD-DRLSSLHG 529
W+++ +E+E R + TEGEE++ +RLS L G
Sbjct: 309 WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDLPG 344
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 482 TEGEEKKDDRLSSLHGSQCKGYPRLLVQHIQECL--NAQRNDART 610
T+ E KK +S L QC R+L H++ CL N RN A +
Sbjct: 274 TKHEHKKHFCMSCL---QCSSSERVLTNHVENCLEINGTRNTAHS 315
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 392 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 487
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 451 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 311
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,166,506
Number of Sequences: 59808
Number of extensions: 422285
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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