Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021340
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 40 0.002
AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical ... 29 4.3
AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical ... 29 4.3
AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical ... 29 4.3
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 28 7.5
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 27 9.9
AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical ... 27 9.9
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 519 ASMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEP 620
A DP+ KGI DFW R +++E ++EHD P
Sbjct: 104 AEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVP 137
Score = 37.9 bits (84), Expect = 0.007
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 1/150 (0%)
Frame = +2
Query: 257 ALRTLQKXFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDD 436
AL+ LQ + IE+ FY VH R IV G EP ++ P +
Sbjct: 32 ALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEG 91
Query: 437 TEEEELARAVQNA-AITEGEEKKDDRLSSLHGSQCKGYPRLLVQHIQECLNAQRNDART* 613
E ++LA + A A + KD L++L L+ + I+E +D
Sbjct: 92 LEGDQLAELYKAAEADPSAKGIKDFWLTALRTHD------LVAEAIEE------HDV--- 136
Query: 614 *TILKCLXDIKVPMHEDPISFTFGIYFAPN 703
IL L D+ +DP F +FA N
Sbjct: 137 -PILSYLTDVTTAASKDPAGFKIEFHFATN 165
>AL023835-4|CAD56254.1| 564|Caenorhabditis elegans Hypothetical
protein Y37A1B.2d protein.
Length = 564
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 377 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSLHGSQCKG 544
+ +Y +D+ + W D+ +E+E R ++I + R S HG +G
Sbjct: 117 VTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQSSIGSNSRRDLSRSHSEHGGPDRG 172
>AL023835-3|CAD56253.1| 566|Caenorhabditis elegans Hypothetical
protein Y37A1B.2c protein.
Length = 566
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 377 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSLHGSQCKG 544
+ +Y +D+ + W D+ +E+E R ++I + R S HG +G
Sbjct: 117 VTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQSSIGSNSRRDLSRSHSEHGGPDRG 172
>AL023835-2|CAA19487.2| 592|Caenorhabditis elegans Hypothetical
protein Y37A1B.2b protein.
Length = 592
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +2
Query: 377 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSLHGSQCKG 544
+ +Y +D+ + W D+ +E+E R ++I + R S HG +G
Sbjct: 143 VTRSSYPSQNDDFDDEWTDEDDEQEPTRPNVQSSIGSNSRRDLSRSHSEHGGPDRG 198
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -3
Query: 356 EACKVFHICIRVHVLHCKTWPQCRQTPSEEFSRRDSPTNIRG*GCHRFCMKAIC 195
+A +V HI + + + PQC+Q +++ P N C+ C IC
Sbjct: 174 QAPQVVHIQLEIQQAQAQCQPQCQQQCQSSCTQQQQPANQCNSACNSQCSN-IC 226
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKK 502
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKK 502
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 425 WRDDTEEEELARAVQNAAITEGEEKK 502
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical
protein Y51H7BM.1 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 570 ICCTKSLGYPLHW 532
+CC K LGYP +W
Sbjct: 52 LCCEKELGYPSNW 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,153
Number of Sequences: 27780
Number of extensions: 311966
Number of successful extensions: 858
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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