Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021340
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    31   0.74 
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    31   0.74 
At2g02790.1 68415.m00222 calmodulin-binding family protein very ...    31   0.74 
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    31   0.98 
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    30   1.7  
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    29   2.3  
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s...    27   9.2  
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    27   9.2  
At2g26530.1 68415.m03183 expressed protein                             27   9.2  
At2g18110.1 68415.m02105 elongation factor 1-beta, putative / EF...    27   9.2  

>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 540 KGIPDFWYNIFRNVSMLSEMMQEHDE 617
           KG+P FW    +N  ++SE + E DE
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDE 149


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 540 KGIPDFWYNIFRNVSMLSEMMQEHDE 617
           KG+P FW    +N  ++SE + E DE
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDE 150



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +2

Query: 230 TPECSSANRALRTLQKXFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE---- 397
           TP       ALR +Q    ++EAKF  E                  R  IVNGT E    
Sbjct: 48  TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107

Query: 398 PNDDECLNPWRDDTEEEE 451
           P DD  ++   + T EE+
Sbjct: 108 PEDDTKVDQGEEKTAEEK 125


>At2g02790.1 68415.m00222 calmodulin-binding family protein very low
           similarity to SP|P12036 Neurofilament triplet H protein
           {Homo sapiens}; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 636

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 395 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSLHGS 532
           +P  DE     RDD  EEEL  A ++ +  E  ++ D ++SS +G+
Sbjct: 429 KPEQDELRTAERDDKAEEELKTAERDDSAEEKIQEPDAQISSENGN 474


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 198 NRLHAEAM-ASLPPNVRRRIAP*ELFRRXLSTLRPSFTVKYMHSNANMKNFTSLFMKSE 371
           N+ H++    + PPN RR  AP   F   ++  RP+F V+ +H  A   + T L  K E
Sbjct: 48  NQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHP-AAANSDTKLSKKQE 105


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 540 KGIPDFWYNIFRNVSMLSEMMQEHDE 617
           KG+PDFW    +N  + +E + E DE
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDE 149


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 537 VKGIPDFWYNIFRNVSMLSEMMQEHDE 617
           +K IPDFW   F +   L E++ E D+
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQ 96


>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
           similarity to SKP1 interacting partner 1 GI:10716947
           from [Arabidopsis thaliana]
          Length = 301

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 530 SQCKGYPRLLVQHIQECLNAQRNDART**TILKCLXDIKVPMHEDPIS 673
           S CKG   L    ++ C++  R+D  T  + LK L +I  P    PI+
Sbjct: 241 SVCKGCSNLEYMDLRGCISLTRSDINTNTSGLKNLTEIIKPDFNPPIA 288


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 392 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDD 508
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKED 236


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 321 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 452
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


>At2g18110.1 68415.m02105 elongation factor 1-beta, putative /
           EF-1-beta, putative nearly identical to eEF-1beta
           [Arabidopsis thaliana] GI:398606
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 395 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDRLSSL 523
           E  DD+ ++ + ++TEEE+ A   + A++    +KK+   SS+
Sbjct: 103 EEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSV 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,778,423
Number of Sequences: 28952
Number of extensions: 287338
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)