Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021339
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical pr...    32   0.43 
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    27   9.2  

>Z81056-8|CAB02907.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.12 protein.
          Length = 307

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 209 IYNLSLWF-FFCISYSFFASIHVISNTVTYF 120
           IY  S+WF FFC+++S FASIH     V ++
Sbjct: 245 IYPDSIWFQFFCLTFS-FASIHCFDGFVMFY 274


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 561 HVSWNILLILYH*IWLRNI 505
           HV  N+L + YH  WL+NI
Sbjct: 96  HVDTNVLRVYYHNSWLQNI 114


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 556 LVEHLAYPIPLNMASKHSNHYNFLILGIEFIELRFSI 446
           +V  L   + L  +SKH   Y FL++G    ++ +SI
Sbjct: 21  IVNPLFIYLVLTKSSKHMGKYRFLLIGFAVFDIFYSI 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,987,465
Number of Sequences: 27780
Number of extensions: 289188
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)