Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.014
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    41   0.033
UniRef50_Q8MTQ4 Cluster: Putative uncharacterized protein; n=1; ...    37   0.53 
UniRef50_Q4Q7V1 Cluster: Putative uncharacterized protein; n=3; ...    36   0.70 

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 144 AGWWYLPARTHKRSYHQ 194
           A WWYLPARTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.7 bits (91), Expect = 0.033
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +2

Query: 11  LIWVDELTAHLV*SGYWSP 67
           L WVDELTAHLV SGYWSP
Sbjct: 157 LRWVDELTAHLVLSGYWSP 175


>UniRef50_Q8MTQ4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 71

 Score = 36.7 bits (81), Expect = 0.53
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = -1

Query: 686 HKLVVPMSRLHKIRNSFGC 630
           +KLVVPMSRLHK+R S GC
Sbjct: 49  YKLVVPMSRLHKLRYSIGC 67


>UniRef50_Q4Q7V1 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 497

 Score = 36.3 bits (80), Expect = 0.70
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 154 HHPAHFCREAVML--RTYISRWVAHLRCRCPWAPVTTLHQVGCELVHPYKP 8
           HHPAHF  EA+      + + +V H   R PW P T L +   EL  P  P
Sbjct: 195 HHPAHFTNEALFYYDDVFNALFVGHTLHRLPWLP-TVLTEASRELFLPMPP 244


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,747,495
Number of Sequences: 1657284
Number of extensions: 12243803
Number of successful extensions: 27220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27218
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)