Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.4  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    26   4.4  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   7.8  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  GGRAHSPPGVKWLLEPMDIYN 81
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 215 FNINESTHLLNVKRTTANSQTLASVLRRTGKK 310
           FNI + TH+L V   T N   L  ++ R  +K
Sbjct: 129 FNIVDYTHILRVAMYTGNKHILEYIVARVKEK 160


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = -3

Query: 246 FNKCVLSFMLNN*FFIFTGGRTSCESARVGTTTLPISAVKQ*CLELISQGGWRIYVVDVH 67
           +NK V  F++ + +     G    +S  V  T L ISA+    + L++ G +R Y++   
Sbjct: 435 WNKPVHVFLMRHVYHSSISGFKLKKSHAVLLTFL-ISALVHEFVMLLATGKFRCYILTFQ 493

Query: 66  GLQ*PLY 46
            LQ PLY
Sbjct: 494 LLQIPLY 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,440
Number of Sequences: 5004
Number of extensions: 51971
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)