Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000     29   3.5  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   4.6  

>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
          Length = 461

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 133 GRNGQGGGTYPRGLTRGPTTSKNKKLIIQH 222
           G NG GGG    GL +GP T    KL++ H
Sbjct: 17  GGNGGGGG----GLKKGPWTQAEDKLLVDH 42


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 515 YLSDSLERLLCNKLYI 468
           YL   L+R+LCNKLY+
Sbjct: 261 YLKSQLDRILCNKLYL 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,891,711
Number of Sequences: 37544
Number of extensions: 344417
Number of successful extensions: 842
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)