Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   4.7  

>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -2

Query: 616 CTTKSHKMFRTYIYLHRFKKTIKE---HIXXXXXXFPTYLIALRGYCAISFIYSQWLSRR 446
           CTTKSH ++   +++ R    I E   H            + +RG  A   +   W+ R+
Sbjct: 519 CTTKSHTLYP--VFMSRLSACIFEWDQHYLKALEDAKKSELEMRGALAPLLL---WMPRK 573

Query: 445 LHKVVMSCS 419
           L KVV+ CS
Sbjct: 574 LWKVVLKCS 582


>SB_28584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 686 HKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDV 591
           +K  +  SRL   RNSF  +  R++N++PQ +
Sbjct: 109 NKFYIQKSRLEIQRNSFSRVGARVWNELPQSL 140


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 445  LHKVVMSCSLRAFQYCNNSYVIINASCKNEYLK-KSNIKKKRQXAEFLTSSS 293
            L K  ++ +L  F+Y +N  V  NASC N+ ++  S +  K +  +F+ S S
Sbjct: 2007 LMKKSINATLAYFKYADNMGVRFNASCFNKTVELMSKMFTKNEEKKFVLSGS 2058


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,594,671
Number of Sequences: 59808
Number of extensions: 399393
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)