Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    30   1.3  
AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical...    29   2.4  
AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical...    29   3.1  
AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    28   7.2  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    28   7.2  

>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -2

Query: 460  WLSRRLHKVVMSCSLRAFQYCNNSYVIINASCKNEYLKKSNIKKKRQXAEFLTSSSQDGG 281
            WLS  +H + +S  L    Y N  Y+     C    L+++  K+     E L   + D  
Sbjct: 1934 WLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRS 1993

Query: 280  *CL*IGGSSF-DVQQVC 233
              L + G+   DV + C
Sbjct: 1994 DILQMEGAELADVARFC 2010


>AL021492-11|CAA16378.1|  684|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3a protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 481 ISFIYSQWLSRRLHKVVMSCSLRAFQYCNNSYV 383
           +S   S++LSRR H V+  C L  F Y   SYV
Sbjct: 61  LSMGLSRYLSRRHHWVIQYCGLLLFLYLIYSYV 93


>AL021492-12|CAJ76949.1|  622|Caenorhabditis elegans Hypothetical
           protein Y45F10D.3b protein.
          Length = 622

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 466 SQWLSRRLHKVVMSCSLRAFQYCNNSYV 383
           S++LSRR H V+  C L  F Y   SYV
Sbjct: 4   SRYLSRRHHWVIQYCGLLLFLYLIYSYV 31


>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 267 LAVVLLTFNKCVLSFMLNN*FFIFTGGRTSCESARV 160
           L V L++FN   LSF+    F+I    +  CE  ++
Sbjct: 646 LIVALISFNIMALSFLFAGVFYIHRRNKERCEETQI 681


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -2

Query: 478 SFIYSQWLSRRLHKVVMSCSLRAFQYCNNSYVIINASCKNEYLKKSNIKKKRQXAEFLTS 299
           SFI S   S RL     S ++R   YC+      N+S KN++LK S     R    F  S
Sbjct: 106 SFIQSDTDSSRLEPDDFSQNVR---YCSTEIDRNNSSSKNDHLKYSRPALSRNSRSFTRS 162

Query: 298 SS 293
           ++
Sbjct: 163 NN 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,367,322
Number of Sequences: 27780
Number of extensions: 301421
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)