Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021336
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29750.1 68417.m04237 expressed protein contains Pfam domain,...    28   6.7  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    28   6.7  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    27   8.8  

>At4g29750.1 68417.m04237 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 776

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 172 LTRGPTTSKNKKLIIQHK*KYTLVERQK 255
           LTRG   S+NK+ I+ ++    L ERQK
Sbjct: 464 LTRGVLVSRNKEYIVFYRVAEALTERQK 491


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
           (Atm) identical to ataxia-telangiectasia mutated protein
           (Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
           profile PF00855: PWWP domain; contains GA donor splice
           site at exon 73
          Length = 3255

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 397 NNSYVIINASCKNEYLKKSNIKKKRQXAEFLTSS 296
           +N++   NASC NE L K N  ++ +  EFL  +
Sbjct: 77  SNNFFESNASCVNENLVKGNGYREDETQEFLVGN 110


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 221 INESTHLLNVKRTTANSQTLASVLRRTGKKLS 316
           INESTHLLN+   T  SQ + + +    +KLS
Sbjct: 324 INESTHLLNLNSRTTLSQPVYNGVIGMLRKLS 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,311
Number of Sequences: 28952
Number of extensions: 272409
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)