Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021335
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 106 1e-23
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 105 3e-23
10_02_0199 + 6668902-6669293,6669825-6669882 38 0.008
11_01_0748 + 6299776-6300042 32 0.30
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 32 0.39
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.2
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 30 1.6
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 2.1
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 29 3.6
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 3.6
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.6
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504... 28 6.3
10_08_0213 - 15912048-15912716 27 8.4
07_03_0803 - 21620754-21620955,21621718-21621780,21622172-216222... 27 8.4
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 27 8.4
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 8.4
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 106 bits (254), Expect = 1e-23
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPXKPW 405
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAP K W
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTW 112
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Frame = +2
Query: 92 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSR 60
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 105 bits (252), Expect = 3e-23
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPXKPW 405
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAP K W
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIW 111
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 83 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSR 59
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
RE GGG A+SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGG----AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>11_01_0748 + 6299776-6300042
Length = 88
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 223 LEAALL--REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
LEA L+ R GGG + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 376 HHDTCYRRHPDRTYEYHHHXHAEFGRQHVQYPMIQHWFGDH 254
HH + H + YE+ + H + RQ QY QH +H
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNH 190
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +1
Query: 217 QELEAALLREQGGGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 381
+++ A ++GGG S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 382 MFAPXKP 402
M P P
Sbjct: 123 MLRPGFP 129
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 55 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 210
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
GGG WG+G + + GGG + SG G G
Sbjct: 38 GGGGSNGGSGWGSGSG-SGYGQASGGGAYASGGGGAG 73
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 250 GGGHQTSAES-WGTGRAVARIPRVRGGGTHRSGQGAFGN 363
GGG+ E+ +G GR RGGG R G+G G+
Sbjct: 168 GGGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>07_03_0167 -
14649782-14649864,14649954-14650078,14650357-14650400,
14650873-14651003,14652469-14652559,14653335-14653445,
14653623-14653774,14653863-14654067,14654436-14654764,
14654850-14655309
Length = 576
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -2
Query: 570 LVVDLLDFVGYNQGNREFFNKCPLA*TKRWDAR*QQRCRQGRSPLSEVDATVPT 409
+++D L+ + + GN +FF++ + + WD + + + RS + D V T
Sbjct: 488 ILIDELNMMIFFFGNAQFFSRLQIIFIRVWDQQHTRNLTRWRSAWTHFDCVVTT 541
>10_08_0213 - 15912048-15912716
Length = 222
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
QGGG+ S +G+GR + GGG + SG G G +GG
Sbjct: 160 QGGGYG-SGSGYGSGRGYGQGGGAYGGG-YASGGGGGGGGGQGG 201
>07_03_0803 -
21620754-21620955,21621718-21621780,21622172-21622250,
21623312-21623424,21623500-21623798
Length = 251
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 543 GYNQGNREFFNKCPLA*TKRWDAR*QQRCRQGRSPLSEVDATV 415
G+ + +++F++ P+ K++ AR RQG SPL + A +
Sbjct: 77 GHQRLVKDYFSQDPIYSDKQFRARRDASSRQGLSPLQKCTAAI 119
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 197 DVHVSMSKNSRQPYCVSKEVVTKPVLNHGVL 289
DVH+ +++NSR Y ++K++V HGVL
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGVL 827
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -1
Query: 346 DRTYEYHHHXHAEFGRQHVQYPMIQH 269
D +HHH H G H Q QH
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQH 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,310
Number of Sequences: 37544
Number of extensions: 336547
Number of successful extensions: 1175
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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