Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021335
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   2e-21
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical...    28   4.3  
AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical...    28   4.3  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    28   5.7  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    27   7.5  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    27   7.5  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   9.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 44/48 (91%), Positives = 44/48 (91%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPXK 399
           G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 385 TYVHHDTCYRRHPDRTYEYHHHXHAEFGRQHVQYPMIQHWFGDHLLAHAVG 233
           T VH D  +  H D     HHH  +  G  H  +  +QH+   H   H  G
Sbjct: 34  TVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHYESHHESHHHGG 80


>AL132949-40|CAN99706.1|  329|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39b protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 105 HIEYIVITHWHGDHV 119


>AL132949-39|CAB61094.1|  295|Caenorhabditis elegans Hypothetical
           protein Y53F4B.39a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 295 HVQYPMIQHWFGDHL 251
           H++Y +I HW GDH+
Sbjct: 71  HIEYIVITHWHGDHV 85


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 173 PIRPDLVNDVHVSMSKNSRQPYCVSKEVVTKPVLNH 280
           P + D ++DVH+S S    Q     K V   P L H
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGH 240


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 88  SPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGGHQT 267
           SPT +  V + +  GAG  QA  ++ Q + PSG G            A L R  GGG+  
Sbjct: 85  SPTTNGMVIQAKTPGAGVIQARHMQSQQSFPSG-GPARVLMNRSSTNAGLSRMVGGGYDQ 143

Query: 268 SAESWGTGRAVARIPRVRGGGT 333
              +   GR +     VR  G+
Sbjct: 144 QLPTAPNGRLMIPSTAVRVPGS 165


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/43 (39%), Positives = 17/43 (39%)
 Frame = +1

Query: 250 GGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GGGH  SA   G            GGG    G GA G   RGG
Sbjct: 506 GGGHVASAGG-GISAMTGAGGEAPGGGAGGRGGGAHGGAGRGG 547


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 385 TYVHHDTCYRRHPDRTYEYHHHXHAEF 305
           TY HH   Y      ++E+HHH H  +
Sbjct: 20  TYAHHSHSY----SHSHEHHHHHHGGY 42


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 376 HHDTCYRRHPDRTYEYHHHXHAEFGRQH 293
           HHD  +++H  + +++HH  H     +H
Sbjct: 120 HHDGHHKKHGRKEHDHHHGHHHGHHHKH 147


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,964,185
Number of Sequences: 27780
Number of extensions: 233816
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)